quicR: RT-QuIC Data Formatting and Analysis

Designed for the curation and analysis of data generated from real-time quaking-induced conversion (RT-QuIC) assays first described by Atarashi et al. (2011) <doi:10.1038/nm.2294>. 'quicR' calculates useful metrics such as maxpoint ratio: Rowden et al. (2023) <doi:10.1099/vir.0.069906-0>; time-to-threshold: Shi et al. (2013) <doi:10.1186/2051-5960-1-44>; and maximum slope. Integration with the output from plate readers allows for seamless input of raw data into the R environment.

Version: 2.1.0
Depends: R (≥ 4.1.0)
Imports: dplyr, ggplot2, janitor, openxlsx, purrr, readxl, reshape2, slider, stats, stringr, tidyr
Suggests: testthat (≥ 3.1.0)
Published: 2025-02-26
DOI: 10.32614/CRAN.package.quicR
Author: Gage Rowden ORCID iD [aut, cre]
Maintainer: Gage Rowden <gage.rowden1145 at gmail.com>
License: GPL-3
NeedsCompilation: no
Materials: README NEWS
CRAN checks: quicR results

Documentation:

Reference manual: quicR.pdf

Downloads:

Package source: quicR_2.1.0.tar.gz
Windows binaries: r-devel: quicR_2.1.0.zip, r-release: quicR_1.0.2.zip, r-oldrel: quicR_2.1.0.zip
macOS binaries: r-devel (arm64): quicR_2.1.0.tgz, r-release (arm64): quicR_2.1.0.tgz, r-oldrel (arm64): quicR_2.1.0.tgz, r-devel (x86_64): quicR_2.1.0.tgz, r-release (x86_64): quicR_2.1.0.tgz, r-oldrel (x86_64): quicR_2.1.0.tgz
Old sources: quicR archive

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