blrm_exnex. These
replace the existing arguments for prior specification, which are now
deprecated and will be removed in the next main version increase of the
package.posterior draws format from blrmfit
objects.plot_toxicity_intervals_stacked(), and another leading to
wrongly ordered facets in plot_toxicity_intervals().
Ensured consistent bayesplot themeing across all
plots.cmdstan 2.36.0cmdstanr backend are now
loaded using the brms package instead of
rstan. This fixes issues with loading results from
cmdstan 2.36.0summary() function using
the interval_prob argument by default now include the lower
end as a closed interval for calls where
predictive = FALSE. For the default underdosing interval,
this includes the probability of exactly 0 now.OncoBayes2 will now report the date
of the release and the respective git commit hash used to create the
sources of the package.num() formatted columns, which OncoBayes2 is
not supporting)blrmfit objects for
divergent transitions or non-convergence of parametersnuts_params,
rhat, log_posterior and
neff_ratio for blrmfit objects as defined in
bayesplotpp_data by about 25% which is used in all
posterior summary functionsewoc_check summary routine for
blrm_trial objects. The returned summary contains MCMC
diagnostics and accuracy estimates of the EWOC metric as defined for the
trial. This allows to assess the MCMC estimation error for EWOC.blrm_trial objects are printed.save_warmup=FALSE.Switch SBC runs to use clustermq in lieu of batchtools. Also now use L’Ecuyer CMG as rng engine during SBC runs.
add critical_quantile function allowing to calculate critical doses which fulfill conditions like EWOC.