Last updated on 2025-03-19 05:53:16 CET.
| Package | WARN | NOTE | OK |
|---|---|---|---|
| adegenet | 3 | 12 | |
| apyramid | 15 | ||
| aweek | 15 | ||
| epikit | 7 | 8 | |
| ezec | 15 | ||
| matchmaker | 7 | 8 | |
| poppr | 1 | 3 | 11 |
| tinkr | 12 | 3 |
Current CRAN status: NOTE: 3, OK: 12
Version: 2.1.11
Check: installed package size
Result: NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
R 2.1Mb
data 1.3Mb
files 1.7Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: NOTE: 7, OK: 8
Version: 0.1.6
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘epidict’
Flavors: r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 15
Current CRAN status: NOTE: 7, OK: 8
Version: 0.1.1
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: WARN: 1, NOTE: 3, OK: 11
Version: 2.9.6
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
MLG-accessors.Rd: genlight-class
aboot.Rd: genind, genpop, genlight-class
bitwise.dist.Rd: genlight-class, genind-class
bitwise.ia.Rd: genlight-class
bootgen-class.Rd: gen-class
bruvo.boot.Rd: genind, boot.phylo, nancycats, nj, nodelabels, tab
bruvo.dist.Rd: genind
bruvo.msn.Rd: genind, nancycats
bruvomat-methods.Rd: genind-class
clonecorrect.Rd: genind-class
coercion-methods.Rd: genind-class, splitStrata
diss.dist.Rd: genind
diversity_ci.Rd: genind
filter_stats.Rd: genind, genlight
fix_replen.Rd: genind
genclone-class.Rd: genind-class, genlight-class
genclone-method.Rd: genind-class
genetic_distance.Rd: genind-class, dist.genpop
genind2genalex.Rd: genind-class
genotype_curve.Rd: genind-class
ia.Rd: import2genind
info_table.Rd: genind-class
informloci.Rd: genind-class
is.clone.Rd: genind-class, genlight-class
missingno.Rd: genind-class, tab
mlg.Rd: ggplot
mlg.filter.Rd: genind-class
pgen.Rd: strata
plot_poppr_msn.Rd: genind-class, genlight-class
poppr-package.Rd: genind-class, genlight-class
poppr.Rd: tab, strata, last_plot
poppr.amova.Rd: genind-class, genlight-class, strata, quasieuclid,
lingoes, cailliez
poppr.msn.Rd: genind, genlight, nancycats, nj, nodelabels, tab
popsub.Rd: genind-class, genlight-class
psex.Rd: strata
read.genalex.Rd: genind, other, genind-class
recode_polyploids.Rd: genind-class, genpop-class
rraf.Rd: strata
shufflepop.Rd: genind-class
snpclone-coercion-methods.Rd: genlight-class
snpclone-method.Rd: genlight-class
test_replen.Rd: genind
upgma.Rd: as.phylo
win.ia.Rd: genlight-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64
Version: 2.9.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Rd warning: MLG-accessors.Rd:110: missing link ‘genlight-class’
Rd warning: aboot.Rd:25: missing link ‘genind’
Rd warning: aboot.Rd:25: missing link ‘genpop’
Rd warning: aboot.Rd:26: missing link ‘genlight-class’
Rd warning: bitwise.dist.Rd:63: missing link ‘genlight-class’
Rd warning: bitwise.dist.Rd:19: missing link ‘genlight-class’
Rd warning: bitwise.dist.Rd:75: missing link ‘genlight-class’
Rd warning: bitwise.dist.Rd:85: missing link ‘genind-class’
Rd warning: bitwise.dist.Rd:126: missing link ‘genlight-class’
Rd warning: bitwise.ia.Rd:10: missing link ‘genlight-class’
Rd warning: bootgen-class.Rd:26: missing link ‘gen-class’
Rd warning: bruvo.boot.Rd:22: missing link ‘genind’
Rd warning: bruvo.boot.Rd:55: missing link ‘boot.phylo’
Rd warning: bruvo.boot.Rd:121: missing link ‘nancycats’
Rd warning: bruvo.boot.Rd:122: missing link ‘nj’
Rd warning: bruvo.boot.Rd:122: missing link ‘boot.phylo’
Rd warning: bruvo.boot.Rd:123: missing link ‘nodelabels’
Rd warning: bruvo.boot.Rd:123: missing link ‘tab’
Rd warning: bruvo.dist.Rd:20: missing link ‘genind’
Rd warning: bruvo.dist.Rd:39: missing link ‘genind’
Rd warning: bruvo.dist.Rd:41: missing link ‘genind’
Rd warning: bruvo.msn.Rd:33: missing link ‘genind’
Rd warning: bruvo.msn.Rd:215: missing link ‘nancycats’
Rd warning: bruvomat-methods.Rd:18: missing link ‘genind-class’
Rd warning: clonecorrect.Rd:11: missing link ‘genind-class’
Rd warning: clonecorrect.Rd:29: missing link ‘genind-class’
Rd warning: coercion-methods.Rd:26: missing link ‘genind-class’
Rd warning: coercion-methods.Rd:29: missing link ‘genind-class’
Rd warning: coercion-methods.Rd:77: missing link ‘splitStrata’
Rd warning: diss.dist.Rd:10: missing link ‘genind’
Rd warning: diversity_ci.Rd:22: missing link ‘genind’
Rd warning: filter_stats.Rd:22: missing link ‘genind’
Rd warning: filter_stats.Rd:23: missing link ‘genlight’
Rd warning: fix_replen.Rd:10: missing link ‘genind’
Rd warning: genclone-class.Rd:12: missing link ‘genind-class’
Rd warning: genclone-class.Rd:13: missing link ‘genlight-class’
Rd warning: genclone-class.Rd:21: missing link ‘genind-class’
Rd warning: genclone-class.Rd:21: missing link ‘genlight-class’
Rd warning: genclone-class.Rd:46: missing link ‘genind-class’
Rd warning: genclone-class.Rd:47: missing link ‘genlight-class’
Rd warning: genclone-class.Rd:73: missing link ‘genind-class’
Rd warning: genclone-class.Rd:73: missing link ‘genlight-class’
Rd warning: genclone-method.Rd:21: missing link ‘genind-class’
Rd warning: genetic_distance.Rd:29: missing link ‘genind-class’
Rd warning: genetic_distance.Rd:60: missing link ‘dist.genpop’
Rd warning: genetic_distance.Rd:60: missing link ‘genind-class’
Rd warning: genind2genalex.Rd:21: missing link ‘genind-class’
Rd warning: genind2genalex.Rd:81: missing link ‘genind-class’
Rd warning: genotype_curve.Rd:19: missing link ‘genind-class’
Rd warning: ia.Rd:305: missing link ‘import2genind’
Rd warning: info_table.Rd:22: missing link ‘genind-class’
Rd warning: info_table.Rd:61: missing link ‘genind-class’
Rd warning: informloci.Rd:29: missing link ‘genind-class’
Rd warning: informloci.Rd:10: missing link ‘genind-class’
Rd warning: is.clone.Rd:23: missing link ‘genind-class’
Rd warning: is.clone.Rd:24: missing link ‘genlight-class’
Rd warning: missingno.Rd:10: missing link ‘genind-class’
Rd warning: missingno.Rd:37: missing link ‘tab’
Rd warning: missingno.Rd:29: missing link ‘genind-class’
Rd warning: mlg.Rd:90: missing link ‘ggplot’
Rd warning: mlg.filter.Rd:41: missing link ‘genind-class’
Rd warning: plot_poppr_msn.Rd:33: missing link ‘genind-class’
Rd warning: plot_poppr_msn.Rd:34: missing link ‘genlight-class’
Rd warning: poppr-package.Rd:19: missing link ‘genind-class’
Rd warning: poppr-package.Rd:20: missing link ‘genlight-class’
Rd warning: poppr.Rd:58: missing link ‘tab’
Rd warning: poppr.Rd:165: missing link ‘last_plot’
Rd warning: poppr.amova.Rd:30: missing link ‘genind-class’
Rd warning: poppr.amova.Rd:30: missing link ‘genlight-class’
Rd warning: poppr.amova.Rd:131: missing link ‘genind-class’
Rd warning: poppr.amova.Rd:132: missing link ‘genlight-class’
Rd warning: poppr.amova.Rd:138: missing link ‘genind-class’
Rd warning: poppr.amova.Rd:139: missing link ‘genlight-class’
Rd warning: poppr.amova.Rd:161: missing link ‘quasieuclid’
Rd warning: poppr.amova.Rd:161: missing link ‘lingoes’
Rd warning: poppr.amova.Rd:161: missing link ‘cailliez’
Rd warning: poppr.msn.Rd:31: missing link ‘genind’
Rd warning: poppr.msn.Rd:32: missing link ‘genlight’
Rd warning: poppr.msn.Rd:199: missing link ‘nancycats’
Rd warning: poppr.msn.Rd:200: missing link ‘nj’
Rd warning: poppr.msn.Rd:200: missing link ‘nodelabels’
Rd warning: poppr.msn.Rd:201: missing link ‘tab’
Rd warning: popsub.Rd:17: missing link ‘genind-class’
Rd warning: popsub.Rd:18: missing link ‘genlight-class’
Rd warning: read.genalex.Rd:47: missing link ‘genind’
Rd warning: read.genalex.Rd:24: missing link ‘other’
Rd warning: read.genalex.Rd:29: missing link ‘genind-class’
Rd warning: read.genalex.Rd:50: missing link ‘genind’
Rd warning: read.genalex.Rd:42: missing link ‘genind-class’
Rd warning: read.genalex.Rd:102: missing link ‘genind-class’
Rd warning: recode_polyploids.Rd:34: missing link ‘genind-class’
Rd warning: recode_polyploids.Rd:10: missing link ‘genind-class’
Rd warning: recode_polyploids.Rd:11: missing link ‘genpop-class’
Rd warning: recode_polyploids.Rd:23: missing link ‘genind-class’
Rd warning: recode_polyploids.Rd:24: missing link ‘genpop-class’
Rd warning: shufflepop.Rd:6: missing link ‘genind-class’
Rd warning: shufflepop.Rd:22: missing link ‘genind-class’
Rd warning: shufflepop.Rd:11: missing link ‘genind-class’
Rd warning: shufflepop.Rd:17: missing link ‘genind-class’
Rd warning: snpclone-coercion-methods.Rd:12: missing link ‘genlight-class’
Rd warning: snpclone-coercion-methods.Rd:21: missing link ‘genlight-class’
Rd warning: snpclone-method.Rd:22: missing link ‘genlight-class’
Rd warning: test_replen.Rd:10: missing link ‘genind’
Rd warning: upgma.Rd:28: missing link ‘as.phylo’
Rd warning: win.ia.Rd:18: missing link ‘genlight-class’
Rd warning: win.ia.Rd:107: missing link ‘genlight-class’
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/poppr.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-14 (Debian 14.2.0-17) 14.2.0’
Flavor: r-patched-linux-x86_64
Current CRAN status: NOTE: 12, OK: 3
Version: 0.2.0
Check: Rd files
Result: NOTE
checkRd: (-1) add_md.Rd:10: Lost braces; missing escapes or markup?
10 | \item{body}{an XML object generated via {tinkr}}
| ^
checkRd: (-1) md_ns.Rd:13: Lost braces; missing escapes or markup?
13 | The {commonmark} package is used to translate markdown to XML, but it does
| ^
checkRd: (-1) md_ns.Rd:14: Lost braces; missing escapes or markup?
14 | not assign a namespace prefix, which means that {xml2} will auto-assign a
| ^
checkRd: (-1) stylesheet.Rd:5: Lost braces; missing escapes or markup?
5 | \title{The {tinkr} stylesheet}
| ^
checkRd: (-1) stylesheet.Rd:14: Lost braces; missing escapes or markup?
14 | This function returns the path to the {tinkr} stylesheet
| ^
checkRd: (-1) stylesheet.Rd:11: Lost braces; missing escapes or markup?
11 | stylesheet used by {tinkr}.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64