Last updated on 2025-03-01 06:51:14 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 7.11 | 111.04 | 118.15 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 5.81 | 79.79 | 85.60 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 210.63 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 212.52 | OK | |||
| r-devel-macos-arm64 | 0.1.0 | 71.00 | OK | |||
| r-devel-macos-x86_64 | 0.1.0 | 127.00 | OK | |||
| r-devel-windows-x86_64 | 0.1.0 | 9.00 | 135.00 | 144.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 7.96 | 106.37 | 114.33 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 6.74 | 105.83 | 112.57 | OK | |
| r-release-macos-arm64 | 0.1.0 | 75.00 | OK | |||
| r-release-macos-x86_64 | 0.1.0 | 148.00 | OK | |||
| r-release-windows-x86_64 | 0.1.0 | 10.00 | 135.00 | 145.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.0 | 136.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.1.0 | 12.00 | 165.00 | 177.00 | OK |
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘metalite.sl-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rtf_exp_duration
> ### Title: Exposure duration table
> ### Aliases: rtf_exp_duration
>
> ### ** Examples
>
> meta <- meta_sl_exposure_example()
>
> meta |>
+ prepare_exp_duration(population = "apat", parameter = "expdur") |>
+ format_exp_duration(display_col = c("n", "prop", "total")) |>
+ rtf_exp_duration(
+ source = "Source: [CDISCpilot: adam-adsl; adex]",
+ path_outdata = tempfile(fileext = ".Rdata"),
+ path_outtable = tempfile(fileext = ".rtf")
+ )
The outdata is saved in/home/hornik/tmp/scratch/RtmpWXk746/file48ab272b5efe7.Rdata
Error in unlist(attr(text, "text_indent_first"), attr(text, "text_indent_left"), :
'recursive' must be a length-1 vector
Calls: rtf_exp_duration ... rtf_encode_table -> paste -> as_rtf_footnote -> unlist
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(metalite.sl)
>
> test_check("metalite.sl")
The outdata is saved in/home/hornik/tmp/scratch/RtmpKiLoz0/file4a94d1a672d2d.Rdata
The output is saved in/home/hornik/tmp/scratch/RtmpKiLoz0/disposition1.rtf
The outdata is saved in/home/hornik/tmp/scratch/RtmpKiLoz0/file4a94d6f8b7ce4.Rdata
The output is saved in/home/hornik/tmp/scratch/RtmpKiLoz0/disposition2.rtf
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Attaching package: 'tidyr'
The following object is masked from 'package:testthat':
matches
The outdata is saved in/home/hornik/tmp/scratch/RtmpKiLoz0/file4a94d2905903e.Rdata
The outdata is saved in/home/hornik/tmp/scratch/RtmpKiLoz0/file4a94d511a6b9e.Rdata
The outdata is saved in/home/hornik/tmp/scratch/RtmpKiLoz0/file4a94d3d65a05.Rdata
The outdata is saved in/home/hornik/tmp/scratch/RtmpKiLoz0/file4a94d5a20b229.Rdata
The output is saved in/home/hornik/tmp/scratch/RtmpKiLoz0/trt_compliance.rtf
The outdata is saved in/home/hornik/tmp/scratch/RtmpKiLoz0/file4a94d280efb85.Rdata
The output is saved in/home/hornik/tmp/scratch/RtmpKiLoz0/trt_compliance1.rtf
[ FAIL 3 | WARN 0 | SKIP 4 | PASS 41 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test-independent-testing-disposition.R:32:3',
'test-independent-testing-disposition.R:55:3',
'test-independent-testing-trt_compliance.R:32:3',
'test-independent-testing-trt_compliance.R:55:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-independent-testing-rtf_exp_duration.R:19:3'): rtf output: n, and prop, NO total. With 2 decimal places. ──
Error in `unlist(attr(text, "text_indent_first"), attr(text, "text_indent_left"),
attr(text, "text_indent_right"))`: 'recursive' must be a length-1 vector
Backtrace:
▆
1. └─metalite.sl::rtf_exp_duration(...) at test-independent-testing-rtf_exp_duration.R:19:3
2. └─metalite.sl::rtf_sl_summary(...)
3. └─metalite.sl:::rtf_output(outdata, path_outdata, path_outtable)
4. ├─r2rtf::write_rtf(r2rtf::rtf_encode(outdata$rtf), file = path_outtable)
5. │ ├─base::write(paste(unlist(rtf), collapse = "\n"), file)
6. │ │ └─base::cat(...)
7. │ ├─base::paste(unlist(rtf), collapse = "\n")
8. │ └─base::unlist(rtf)
9. └─r2rtf::rtf_encode(outdata$rtf)
10. └─r2rtf:::rtf_encode_table(tbl, verbose = verbose)
11. ├─base::paste(as_rtf_footnote(tbl_1), collapse = "\n")
12. └─r2rtf:::as_rtf_footnote(tbl_1)
13. └─base::unlist(...)
── Error ('test-independent-testing-rtf_exp_duration.R:38:3'): rtf output: n, prop and total, with Landscape ──
Error in `unlist(attr(text, "text_indent_first"), attr(text, "text_indent_left"),
attr(text, "text_indent_right"))`: 'recursive' must be a length-1 vector
Backtrace:
▆
1. └─metalite.sl::rtf_exp_duration(...) at test-independent-testing-rtf_exp_duration.R:38:3
2. └─metalite.sl::rtf_sl_summary(...)
3. └─metalite.sl:::rtf_output(outdata, path_outdata, path_outtable)
4. ├─r2rtf::write_rtf(r2rtf::rtf_encode(outdata$rtf), file = path_outtable)
5. │ ├─base::write(paste(unlist(rtf), collapse = "\n"), file)
6. │ │ └─base::cat(...)
7. │ ├─base::paste(unlist(rtf), collapse = "\n")
8. │ └─base::unlist(rtf)
9. └─r2rtf::rtf_encode(outdata$rtf)
10. └─r2rtf:::rtf_encode_table(tbl, verbose = verbose)
11. ├─base::paste(as_rtf_footnote(tbl_1), collapse = "\n")
12. └─r2rtf:::as_rtf_footnote(tbl_1)
13. └─base::unlist(...)
── Error ('test-independent-testing-rtf_exp_duration.R:57:3'): rtf output: n, prop and total, with no value of col_rel_width ──
Error in `unlist(attr(text, "text_indent_first"), attr(text, "text_indent_left"),
attr(text, "text_indent_right"))`: 'recursive' must be a length-1 vector
Backtrace:
▆
1. └─metalite.sl::rtf_exp_duration(...) at test-independent-testing-rtf_exp_duration.R:57:3
2. └─metalite.sl::rtf_sl_summary(...)
3. └─metalite.sl:::rtf_output(outdata, path_outdata, path_outtable)
4. ├─r2rtf::write_rtf(r2rtf::rtf_encode(outdata$rtf), file = path_outtable)
5. │ ├─base::write(paste(unlist(rtf), collapse = "\n"), file)
6. │ │ └─base::cat(...)
7. │ ├─base::paste(unlist(rtf), collapse = "\n")
8. │ └─base::unlist(rtf)
9. └─r2rtf::rtf_encode(outdata$rtf)
10. └─r2rtf:::rtf_encode_table(tbl, verbose = verbose)
11. ├─base::paste(as_rtf_footnote(tbl_1), collapse = "\n")
12. └─r2rtf:::as_rtf_footnote(tbl_1)
13. └─base::unlist(...)
[ FAIL 3 | WARN 0 | SKIP 4 | PASS 41 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘baseline-character.Rmd’ using rmarkdown
--- finished re-building ‘baseline-character.Rmd’
--- re-building ‘disposition.Rmd’ using rmarkdown
--- finished re-building ‘disposition.Rmd’
--- re-building ‘exp_duration.Rmd’ using rmarkdown
Quitting from lines 149-155 [unnamed-chunk-11] (exp_duration.Rmd)
Error: processing vignette 'exp_duration.Rmd' failed with diagnostics:
'recursive' must be a length-1 vector
--- failed re-building ‘exp_duration.Rmd’
--- re-building ‘interactive-baseline.Rmd’ using rmarkdown
--- finished re-building ‘interactive-baseline.Rmd’
--- re-building ‘metalite.sl.Rmd’ using rmarkdown
--- finished re-building ‘metalite.sl.Rmd’
--- re-building ‘trt_compliance.Rmd’ using rmarkdown
--- finished re-building ‘trt_compliance.Rmd’
SUMMARY: processing the following file failed:
‘exp_duration.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘metalite.sl-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rtf_exp_duration
> ### Title: Exposure duration table
> ### Aliases: rtf_exp_duration
>
> ### ** Examples
>
> meta <- meta_sl_exposure_example()
>
> meta |>
+ prepare_exp_duration(population = "apat", parameter = "expdur") |>
+ format_exp_duration(display_col = c("n", "prop", "total")) |>
+ rtf_exp_duration(
+ source = "Source: [CDISCpilot: adam-adsl; adex]",
+ path_outdata = tempfile(fileext = ".Rdata"),
+ path_outtable = tempfile(fileext = ".rtf")
+ )
The outdata is saved in/tmp/RtmpJZeasj/file11ac823cc9da58.Rdata
Error in unlist(attr(text, "text_indent_first"), attr(text, "text_indent_left"), :
'recursive' must be a length-1 vector
Calls: rtf_exp_duration ... rtf_encode_table -> paste -> as_rtf_footnote -> unlist
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(metalite.sl)
>
> test_check("metalite.sl")
The outdata is saved in/tmp/Rtmp5OQiuv/file11ebc27e59ac07.Rdata
The output is saved in/tmp/Rtmp5OQiuv/disposition1.rtf
The outdata is saved in/tmp/Rtmp5OQiuv/file11ebc21664fe33.Rdata
The output is saved in/tmp/Rtmp5OQiuv/disposition2.rtf
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Attaching package: 'tidyr'
The following object is masked from 'package:testthat':
matches
The outdata is saved in/tmp/Rtmp5OQiuv/file11ebc232e98cda.Rdata
The outdata is saved in/tmp/Rtmp5OQiuv/file11ebc24b6aba82.Rdata
The outdata is saved in/tmp/Rtmp5OQiuv/file11ebc26b3d2c39.Rdata
The outdata is saved in/tmp/Rtmp5OQiuv/file11ebc2a31e14a.Rdata
The output is saved in/tmp/Rtmp5OQiuv/trt_compliance.rtf
The outdata is saved in/tmp/Rtmp5OQiuv/file11ebc26d43705f.Rdata
The output is saved in/tmp/Rtmp5OQiuv/trt_compliance1.rtf
[ FAIL 3 | WARN 0 | SKIP 4 | PASS 41 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test-independent-testing-disposition.R:32:3',
'test-independent-testing-disposition.R:55:3',
'test-independent-testing-trt_compliance.R:32:3',
'test-independent-testing-trt_compliance.R:55:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-independent-testing-rtf_exp_duration.R:19:3'): rtf output: n, and prop, NO total. With 2 decimal places. ──
Error in `unlist(attr(text, "text_indent_first"), attr(text, "text_indent_left"),
attr(text, "text_indent_right"))`: 'recursive' must be a length-1 vector
Backtrace:
▆
1. └─metalite.sl::rtf_exp_duration(...) at test-independent-testing-rtf_exp_duration.R:19:3
2. └─metalite.sl::rtf_sl_summary(...)
3. └─metalite.sl:::rtf_output(outdata, path_outdata, path_outtable)
4. ├─r2rtf::write_rtf(r2rtf::rtf_encode(outdata$rtf), file = path_outtable)
5. │ ├─base::write(paste(unlist(rtf), collapse = "\n"), file)
6. │ │ └─base::cat(...)
7. │ ├─base::paste(unlist(rtf), collapse = "\n")
8. │ └─base::unlist(rtf)
9. └─r2rtf::rtf_encode(outdata$rtf)
10. └─r2rtf:::rtf_encode_table(tbl, verbose = verbose)
11. ├─base::paste(as_rtf_footnote(tbl_1), collapse = "\n")
12. └─r2rtf:::as_rtf_footnote(tbl_1)
13. └─base::unlist(...)
── Error ('test-independent-testing-rtf_exp_duration.R:38:3'): rtf output: n, prop and total, with Landscape ──
Error in `unlist(attr(text, "text_indent_first"), attr(text, "text_indent_left"),
attr(text, "text_indent_right"))`: 'recursive' must be a length-1 vector
Backtrace:
▆
1. └─metalite.sl::rtf_exp_duration(...) at test-independent-testing-rtf_exp_duration.R:38:3
2. └─metalite.sl::rtf_sl_summary(...)
3. └─metalite.sl:::rtf_output(outdata, path_outdata, path_outtable)
4. ├─r2rtf::write_rtf(r2rtf::rtf_encode(outdata$rtf), file = path_outtable)
5. │ ├─base::write(paste(unlist(rtf), collapse = "\n"), file)
6. │ │ └─base::cat(...)
7. │ ├─base::paste(unlist(rtf), collapse = "\n")
8. │ └─base::unlist(rtf)
9. └─r2rtf::rtf_encode(outdata$rtf)
10. └─r2rtf:::rtf_encode_table(tbl, verbose = verbose)
11. ├─base::paste(as_rtf_footnote(tbl_1), collapse = "\n")
12. └─r2rtf:::as_rtf_footnote(tbl_1)
13. └─base::unlist(...)
── Error ('test-independent-testing-rtf_exp_duration.R:57:3'): rtf output: n, prop and total, with no value of col_rel_width ──
Error in `unlist(attr(text, "text_indent_first"), attr(text, "text_indent_left"),
attr(text, "text_indent_right"))`: 'recursive' must be a length-1 vector
Backtrace:
▆
1. └─metalite.sl::rtf_exp_duration(...) at test-independent-testing-rtf_exp_duration.R:57:3
2. └─metalite.sl::rtf_sl_summary(...)
3. └─metalite.sl:::rtf_output(outdata, path_outdata, path_outtable)
4. ├─r2rtf::write_rtf(r2rtf::rtf_encode(outdata$rtf), file = path_outtable)
5. │ ├─base::write(paste(unlist(rtf), collapse = "\n"), file)
6. │ │ └─base::cat(...)
7. │ ├─base::paste(unlist(rtf), collapse = "\n")
8. │ └─base::unlist(rtf)
9. └─r2rtf::rtf_encode(outdata$rtf)
10. └─r2rtf:::rtf_encode_table(tbl, verbose = verbose)
11. ├─base::paste(as_rtf_footnote(tbl_1), collapse = "\n")
12. └─r2rtf:::as_rtf_footnote(tbl_1)
13. └─base::unlist(...)
[ FAIL 3 | WARN 0 | SKIP 4 | PASS 41 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc