Last updated on 2024-12-28 05:50:27 CET.
| Package | NOTE | OK |
|---|---|---|
| bcfrailph | 10 | 3 |
| bcfrailphdv | 10 | 3 |
Current CRAN status: NOTE: 10, OK: 3
Version: 0.1.1
Check: Rd files
Result: NOTE
checkRd: (-1) bcfrailph.Rd:35: Lost braces; missing escapes or markup?
35 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}
| ^
checkRd: (-1) bcfrailph.Rd:36: Lost braces; missing escapes or markup?
36 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}
| ^
checkRd: (-1) bcfrailph.Rd:37: Lost braces; missing escapes or markup?
37 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameters.}
| ^
checkRd: (-1) bcfrailph.Rd:42: Lost braces; missing escapes or markup?
42 | \item \code{X}-{Matrix of observed covariates.}
| ^
checkRd: (-1) bcfrailph.Rd:43: Lost braces; missing escapes or markup?
43 | \item \code{time}-{the observed survival time.}
| ^
checkRd: (-1) bcfrailph.Rd:44: Lost braces; missing escapes or markup?
44 | \item \code{censor}-{censoring indicator.}
| ^
checkRd: (-1) bcfrailph.Rd:45: Lost braces; missing escapes or markup?
45 | \item \code{resid}-{the martingale residuals.}
| ^
checkRd: (-1) bcfrailph.Rd:46: Lost braces; missing escapes or markup?
46 | \item \code{lin.prid}-{the vector of linear predictors.}
| ^
checkRd: (-1) bcfrailph.Rd:47: Lost braces; missing escapes or markup?
47 | \item \code{frail}-{estimated Frailty values.}
| ^
checkRd: (-1) bcfrailph.Rd:48: Lost braces; missing escapes or markup?
48 | \item \code{iteration}-{Number of outer iterations.}
| ^
checkRd: (-1) bcfrailph.Rd:49: Lost braces; missing escapes or markup?
49 | \item \code{e.time}-{the vector of unique event times.}
| ^
checkRd: (-1) bcfrailph.Rd:50: Lost braces; missing escapes or markup?
50 | \item \code{n.event}- {the number of events at each of the unique event times.}
| ^
checkRd: (-1) bcfrailph.Rd:51: Lost braces; missing escapes or markup?
51 | \item \code{convergence}-{an indicator, 1 if converge and 0 otherwise.}
| ^
checkRd: (-1) bcfrailph.Rd:52: Lost braces; missing escapes or markup?
52 | \item \code{history}-{an array containing records of estimates and other information on each iterations.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:32: Lost braces; missing escapes or markup?
32 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:33: Lost braces; missing escapes or markup?
33 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:34: Lost braces; missing escapes or markup?
34 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameters.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:39: Lost braces; missing escapes or markup?
39 | \item \code{X}-{Matrix of observed covariates.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:40: Lost braces; missing escapes or markup?
40 | \item \code{time}-{the observed survival time.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:41: Lost braces; missing escapes or markup?
41 | \item \code{censor}-{censoring indicator.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:42: Lost braces; missing escapes or markup?
42 | \item \code{resid}-{the martingale residuals.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:43: Lost braces; missing escapes or markup?
43 | \item \code{lin.prid}-{the vector of linear predictors.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:44: Lost braces; missing escapes or markup?
44 | \item \code{frail}-{estimated Frailty values.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:45: Lost braces; missing escapes or markup?
45 | \item \code{iteration}-{Number of outer iterations.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:46: Lost braces; missing escapes or markup?
46 | \item \code{e.time}-{the vector of unique event times.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:47: Lost braces; missing escapes or markup?
47 | \item \code{n.event}- {the number of events at each of the unique event times.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:48: Lost braces; missing escapes or markup?
48 | \item \code{convergence}-{an indicator, 1 if converge and 0 otherwise.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:49: Lost braces; missing escapes or markup?
49 | \item \code{history}-{an array containing records of estimates and other information on each iterations.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:21: Lost braces; missing escapes or markup?
21 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:22: Lost braces; missing escapes or markup?
22 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:23: Lost braces; missing escapes or markup?
23 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameters.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:28: Lost braces; missing escapes or markup?
28 | \item \code{X}-{Matrix of observed covariates.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:29: Lost braces; missing escapes or markup?
29 | \item \code{time}-{the observed survival time.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:30: Lost braces; missing escapes or markup?
30 | \item \code{censor}-{censoring indicator.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:31: Lost braces; missing escapes or markup?
31 | \item \code{resid}-{the martingale residuals.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:32: Lost braces; missing escapes or markup?
32 | \item \code{lin.prid}-{the vector of linear predictors.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:33: Lost braces; missing escapes or markup?
33 | \item \code{frail}-{estimated Frailty values.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:34: Lost braces; missing escapes or markup?
34 | \item \code{iteration}-{Number of outer iterations.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:35: Lost braces; missing escapes or markup?
35 | \item \code{e.time}-{the vector of unique event times.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:36: Lost braces; missing escapes or markup?
36 | \item \code{n.event}- {the number of events at each of the unique event times.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:37: Lost braces; missing escapes or markup?
37 | \item \code{convergence}-{an indicator, 1 if converge and 0 otherwise.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:38: Lost braces; missing escapes or markup?
38 | \item \code{history}-{an array containing records of estimates and other information on each iterations.}
| ^
checkRd: (-1) shrgamsp.Rd:32: Lost braces; missing escapes or markup?
32 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}
| ^
checkRd: (-1) shrgamsp.Rd:33: Lost braces; missing escapes or markup?
33 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}
| ^
checkRd: (-1) shrgamsp.Rd:34: Lost braces; missing escapes or markup?
34 | \item \code{vcov}- {Variance Covariance matrix of the Estimated Covariate coefficients obtained from the observed information matrix.}
| ^
checkRd: (-1) shrgamsp.Rd:35: Lost braces; missing escapes or markup?
35 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameter.}
| ^
checkRd: (-1) shrgamsp.Rd:40: Lost braces; missing escapes or markup?
40 | \item \code{X}-{Matrix of observed covariates.}
| ^
checkRd: (-1) shrgamsp.Rd:41: Lost braces; missing escapes or markup?
41 | \item \code{time}-{the observed survival time.}
| ^
checkRd: (-1) shrgamsp.Rd:42: Lost braces; missing escapes or markup?
42 | \item \code{censor}-{censoring indicator.}
| ^
checkRd: (-1) shrgamsp.Rd:43: Lost braces; missing escapes or markup?
43 | \item \code{resid}-{the martingale residuals.}
| ^
checkRd: (-1) shrgamsp.Rd:44: Lost braces; missing escapes or markup?
44 | \item \code{lin.prid}-{the vector of linear predictors.}
| ^
checkRd: (-1) shrgamsp.Rd:45: Lost braces; missing escapes or markup?
45 | \item \code{frail}-{estimated Frailty values.}
| ^
checkRd: (-1) shrgamsp.Rd:46: Lost braces; missing escapes or markup?
46 | \item \code{iteration}-{Number of outer iterations.}
| ^
checkRd: (-1) shrgamsp.Rd:47: Lost braces; missing escapes or markup?
47 | \item \code{e.time}-{the vector of unique event times.}
| ^
checkRd: (-1) shrgamsp.Rd:48: Lost braces; missing escapes or markup?
48 | \item \code{n.event}- {the number of events at each of the unique event times.}
| ^
checkRd: (-1) shrgamsp.Rd:49: Lost braces
49 | \item \code{convergence}-{an indicator of convergence . see \code{\link{nlminb}}.}
| ^
checkRd: (-1) simbcfrailph.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfrailph.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfrailph.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfrailph.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfrailph.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfrailph.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfrailph.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstdybcf.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstdybcf.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstdybcf.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstdybcf.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstdybcf.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstdybcf.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstdybcf.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.1.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
shrgamsp.Rd: coxph
simstdybcf.Rd: coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 10, OK: 3
Version: 0.1.1
Check: Rd files
Result: NOTE
checkRd: (-1) bcfraildv.Rd:35: Lost braces; missing escapes or markup?
35 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}
| ^
checkRd: (-1) bcfraildv.Rd:36: Lost braces; missing escapes or markup?
36 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}
| ^
checkRd: (-1) bcfraildv.Rd:37: Lost braces; missing escapes or markup?
37 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameters.}
| ^
checkRd: (-1) bcfraildv.Rd:42: Lost braces; missing escapes or markup?
42 | \item \code{X}-{Matrix of observed covariates.}
| ^
checkRd: (-1) bcfraildv.Rd:43: Lost braces; missing escapes or markup?
43 | \item \code{time}-{the observed survival time.}
| ^
checkRd: (-1) bcfraildv.Rd:44: Lost braces; missing escapes or markup?
44 | \item \code{censor}-{censoring indicator.}
| ^
checkRd: (-1) bcfraildv.Rd:45: Lost braces; missing escapes or markup?
45 | \item \code{resid}-{the martingale residuals.}
| ^
checkRd: (-1) bcfraildv.Rd:46: Lost braces; missing escapes or markup?
46 | \item \code{lin.prid}-{the vector of linear predictors.}
| ^
checkRd: (-1) bcfraildv.Rd:47: Lost braces; missing escapes or markup?
47 | \item \code{frail}-{estimated Frailty values.}
| ^
checkRd: (-1) bcfraildv.Rd:48: Lost braces; missing escapes or markup?
48 | \item \code{iteration}-{Number of outer iterations.}
| ^
checkRd: (-1) bcfraildv.Rd:49: Lost braces; missing escapes or markup?
49 | \item \code{e.time}-{the vector of unique event times.}
| ^
checkRd: (-1) bcfraildv.Rd:50: Lost braces; missing escapes or markup?
50 | \item \code{n.event}- {the number of events at each of the unique event times.}
| ^
checkRd: (-1) bcfraildv.Rd:51: Lost braces; missing escapes or markup?
51 | \item \code{convergence}-{an indicator, 0 if converge and 1 otherwise.}
| ^
checkRd: (-1) bcfrailpar.Rd:41: Lost braces; missing escapes or markup?
41 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}
| ^
checkRd: (-1) bcfrailpar.Rd:42: Lost braces; missing escapes or markup?
42 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}
| ^
checkRd: (-1) bcfrailpar.Rd:43: Lost braces; missing escapes or markup?
43 | \item \code{basehazpar} - {A vector of estimated baseline hazard parameters i.e. scale and shape.}
| ^
checkRd: (-1) bcfrailpar.Rd:44: Lost braces; missing escapes or markup?
44 | \item \code{stderr}-{A vector containing the Standard errors of the Estimated parameters with the order of frailty parameters,baseline hazard parameters and covariate coefficients.}
| ^
checkRd: (-1) bcfrailpar.Rd:45: Lost braces; missing escapes or markup?
45 | \item \code{vcov}- {Variance Covariance matrix of the Estimated parameters.}
| ^
checkRd: (-1) bcfrailpar.Rd:46: Lost braces; missing escapes or markup?
46 | \item \code{loglik}-{Log likelihood of the model.}
| ^
checkRd: (-1) bcfrailpar.Rd:47: Lost braces; missing escapes or markup?
47 | \item \code{AIC}-{AIC of the model.}
| ^
checkRd: (-1) bcfrailpar.Rd:48: Lost braces; missing escapes or markup?
48 | \item \code{BIC}-{BIC of the model.}
| ^
checkRd: (-1) bcfrailpar.Rd:49: Lost braces
49 | \item \code{iterations}-{Number of outer iterations.See\link{constrOptim} for further.}
| ^
checkRd: (-1) bcfrailpar.Rd:50: Lost braces
50 | \item \code{convergence}-{An indicator of convergence. See\link{constrOptim} for further.}
| ^
checkRd: (-1) simbcfraildv.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfraildv.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfraildv.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfraildv.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfraildv.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.1.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
bcfraildv.Rd: bcfrailph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64