Last updated on 2024-12-28 05:50:25 CET.
| Package | NOTE | OK |
|---|---|---|
| learnPopGen | 13 | |
| phytools | 3 | 10 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 2.3-0
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
add.arrow.Rd: nodelabels
add.random.Rd: plot.phylo
anc.Bayes.Rd: ace
anc.ML.Rd: ace
anc.trend.Rd: ace
ancr.Rd: nodelabels
bd.Rd: birthdeath
bind.tip.Rd: bind.tree
bind.tree.simmap.Rd: bind.tree
cladelabels.Rd: nodelabels
cophylo.Rd: cophyloplot
describe.simmap.Rd: all.equal.phylo
di2multi.simmap.Rd: di2multi, multi2di
drop.tip.contMap.Rd: drop.tip, keep.tip
drop.tip.multiSimmap.Rd: drop.tip, keep.tip, drop.tip.multiPhylo
drop.tip.simmap.Rd: drop.tip, keep.tip, extract.clade
estDiversity.Rd: ace
exhaustiveMP.Rd: phyDat, parsimony, optim.parsimony, pratchet
export.as.xml.Rd: read.nexus
fancyTree.Rd: drop.tip, plot.phylo
fastAnc.Rd: ace, pic
fastMRCA.Rd: getMRCA, mrca
findMRCA.Rd: mrca, vcv.phylo, getMRCA
fit.bd.Rd: birthdeath
fitMk.Rd: ace
fitPagel.Rd: ace
force.ultrametric.Rd: nnls.tree, is.ultrametric
getCladesofSize.Rd: extract.clade
getDescendants.Rd: Descendants
getSisters.Rd: Siblings
labelnodes.Rd: nodelabels
ladderize.simmap.Rd: ladderize
lambda.transform.Rd: vcv.phylo
likMlambda.Rd: vcv.phylo
linklabels.Rd: nodelabels, tiplabels
make.simmap.Rd: ace
map.to.singleton.Rd: plot.phylo, collapse.singles, drop.tip
midpoint.root.Rd: midpoint, root
modified.Grafen.Rd: compute.brlen
mrp.supertree.Rd: pratchet, optim.parsimony, prop.part
multiC.Rd: vcv.phylo
multiRF.Rd: prop.part
nodelabels.cophylo.Rd: nodelabels, edgelabels, tiplabels
optim.phylo.ls.Rd: nni
pbtree.Rd: bind.tree
pgls.Ives.Rd: gls
phyl.resid.Rd: gls
phyl.vcv.Rd: vcv.phylo
phylo.to.map.Rd: map
phylomorphospace3d.Rd: scatterplot3d
plotBranchbyTrait.Rd: plot.phylo
plotSimmap.Rd: nodelabels, plot.phylo
plotThresh.Rd: plot.phylo
plotTree.Rd: plot.phylo
ratebystate.Rd: pic
ratebytree.Rd: ginv, ace
read.newick.Rd: read.nexus, read.tree, collapse.singles
read.simmap.Rd: read.nexus, read.tree
reorder.backbonePhylo.Rd: reorder.phylo
reorderSimmap.Rd: reorder.phylo
rep.phylo.Rd: c.phylo
reroot.Rd: root
rerootingMethod.Rd: ace
resolveNode.Rd: multi2di
rotateNodes.Rd: rotate
starTree.Rd: stree
treeSlice.Rd: extract.clade
untangle.Rd: plot.phylo, reorder.phylo, read.tree
vcvPhylo.Rd: vcv.phylo
writeAncestors.Rd: ace, write.tree
writeNexus.Rd: write.nexus
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64