Last updated on 2025-03-01 06:51:10 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 3.52 | 37.85 | 41.37 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 2.34 | 28.18 | 30.52 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 76.19 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 87.45 | OK | |||
| r-devel-macos-arm64 | 1.1.4 | 30.00 | OK | |||
| r-devel-macos-x86_64 | 1.1.4 | 66.00 | OK | |||
| r-devel-windows-x86_64 | 1.1.4 | 4.00 | 243.00 | 247.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1.4 | 2.85 | 35.28 | 38.13 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 3.30 | 34.74 | 38.04 | OK | |
| r-release-macos-arm64 | 1.1.4 | 46.00 | OK | |||
| r-release-macos-x86_64 | 1.1.4 | 104.00 | OK | |||
| r-release-windows-x86_64 | 1.1.4 | 5.00 | 375.00 | 380.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.4 | 57.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.4 | 6.00 | 161.00 | 167.00 | ERROR |
Version: 1.1.4
Check: tests
Result: ERROR
Running 'testthat.R' [173s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(jlmerclusterperm)
>
> test_check("jlmerclusterperm")
Julia Version 1.8.5
Commit 17cfb8e65e (2023-01-08 06:45 UTC)
Platform Info:
OS: Windows (x86_64-w64-mingw32)
CPU: 48 × AMD EPYC 7443 24-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-13.0.1 (ORCJIT, znver3)
Threads: 1 on 96 virtual cores
nothing
ℹ Starting Julia with 2 threads
✔ Starting Julia with 2 threads [5.1s]
ℹ Activating package environment
Precompiling project...
✗ GLM
✗ MixedModels
✗ JlmerClusterPerm
0 dependencies successfully precompiled in 89 seconds. 105 already precompiled.
4 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages
✔ Activating package environment [1m 33.4s]
Status `D:\temp\2025_02_15_01_50_01_12291\RtmpQbfL0l\julia\Project.toml`
⌅ [a93c6f00] DataFrames v1.3.6
[31c24e10] Distributions v0.25.117
⌅ [38e38edf] GLM v1.8.3
[2a59065a] JlmerClusterPerm v0.1.1 `JlmerClusterPerm`
⌅ [ff71e718] MixedModels v4.28.0
⌅ [92933f4c] ProgressMeter v1.7.2
⌅ [74087812] Random123 v1.6.2
⌃ [2913bbd2] StatsBase v0.33.21
[3eaba693] StatsModels v0.7.4
[fd094767] Suppressor v0.2.8
[9a3f8284] Random
Info Packages marked with ⌃ and ⌅ have new versions available, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated`
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i Starting Julia with 2 threads
v Starting Julia with 2 threads [4.9s]
i Activating package environment
v Activating package environment [6.1s]
i Running package setup scripts (1/11)
i Running package setup scripts (5/11)
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsFuns [4c63d2b9-4356-54db-8cca-17b64c39e42c]
│ exception = Required dependency SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] failed to load from a cache file.
└ @ Base loading.jl:1349
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsModels [3eaba693-59b7-5ba5-a881-562e759f1c8d]
│ exception = ErrorException("Required dependency SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] failed to load from a cache file.")
└ @ Base loading.jl:1349
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsFuns [4c63d2b9-4356-54db-8cca-17b64c39e42c]
│ exception = ErrorException("Required dependency SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] failed to load from a cache file.")
└ @ Base loading.jl:1349
i Running package setup scripts (6/11)
x Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>.
i Running package setup scripts (6/11)
x Running package setup scripts (6/11) [18.4s]
Starting Julia ...
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsFuns [4c63d2b9-4356-54db-8cca-17b64c39e42c]
│ exception = Required dependency SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] failed to load from a cache file.
└ @ Base loading.jl:1349
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsModels [3eaba693-59b7-5ba5-a881-562e759f1c8d]
│ exception = ErrorException("Required dependency SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] failed to load from a cache file.")
└ @ Base loading.jl:1349
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsFuns [4c63d2b9-4356-54db-8cca-17b64c39e42c]
│ exception = ErrorException("Required dependency SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] failed to load from a cache file.")
└ @ Base loading.jl:1349
✖ Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>.
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 5 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
• On CRAN (7): 'test-jlmer.R:1:1', 'test-julia_rng.R:1:1',
'test-permute.R:1:1', 'test-progress.R:1:1', 'test-singularity.R:1:1',
'test-threshold_search.R:1:1', 'test-timewise_statistics.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-aaa-b-setup.R:7:3'): Setup with seed works (use 2 for testing) ──
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: ArgumentError: Package Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] is required but does not seem to be installed:
- Run `Pkg.instantiate()` to install all recorded dependencies.
Stacktrace:
[1] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1306
[2] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[3] macro expansion
@ .\loading.jl:1180 [inlined]
[4] macro expansion
@ .\lock.jl:223 [inlined]
[5] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[6] eval
@ .\boot.jl:368 [inlined]
[7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[8] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[9] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:150
[10] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[11] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[12] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:67
[13] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:55
[14] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\communicating.jl:185
[15] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_true(...) at test-aaa-b-setup.R:7:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::jlmerclusterperm_setup(...)
5. └─jlmerclusterperm:::setup_with_progress(...)
6. ├─base::withCallingHandlers(...)
7. └─jlmerclusterperm:::source_jl(verbose = verbose)
8. └─JuliaConnectoR::juliaEval(jl_pkgs[i])
9. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
10. ├─base::tryCatch(...)
11. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
12. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
13. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
14. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
15. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Failure ('test-aaa-b-setup.R:13:3'): RNG initializes to seed=1 counter=0 ────
get_rng_seed() (`actual`) not equal to 1 (`expected`).
`actual` is NULL
`expected` is a double vector (1)
── Error ('test-aaa-b-setup.R:14:3'): RNG initializes to seed=1 counter=0 ──────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: UndefVarError: rng not defined
Stacktrace:
[1] top-level scope
@ string:1
[2] eval
@ .\boot.jl:368 [inlined]
[3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[4] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[5] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:150
[6] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[7] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[8] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:67
[9] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:55
[10] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\communicating.jl:185
[11] serve(port_hint::Int64; multiclient::Bool, portfile::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\communicating.jl:152
[12] top-level scope
@ D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\main.jl:23
[13] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[14] exec_options(opts::Base.JLOptions)
@ Base .\client.jl:303
[15] _start()
@ Base .\client.jl:522
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_equal(get_rng_state(), 0) at test-aaa-b-setup.R:14:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::get_rng_state()
5. └─JuliaConnectoR::juliaEval("Int(rng.ctr1)")
6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
7. ├─base::tryCatch(...)
8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
12. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Error ('test-clusterpermute.R:3:1'): (code run outside of `test_that()`) ────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: ArgumentError: Package Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] is required but does not seem to be installed:
- Run `Pkg.instantiate()` to install all recorded dependencies.
Stacktrace:
[1] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1306
[2] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[3] macro expansion
@ .\loading.jl:1180 [inlined]
[4] macro expansion
@ .\lock.jl:223 [inlined]
[5] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[6] eval
@ .\boot.jl:368 [inlined]
[7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[8] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[9] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:150
[10] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[11] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[12] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:67
[13] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:55
[14] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\communicating.jl:185
[15] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:1
Backtrace:
▆
1. └─jlmerclusterperm::jlmerclusterperm_setup(...) at test-clusterpermute.R:3:1
2. └─jlmerclusterperm:::setup_with_progress(...)
3. ├─base::withCallingHandlers(...)
4. └─jlmerclusterperm:::source_jl(verbose = verbose)
5. └─JuliaConnectoR::juliaEval(jl_pkgs[i])
6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
7. ├─base::tryCatch(...)
8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
12. └─JuliaConnectoR:::handleCallbacksAndOutput()
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 5 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running 'testthat.R' [311s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(jlmerclusterperm)
>
> test_check("jlmerclusterperm")
Julia Version 1.8.5
Commit 17cfb8e65e (2023-01-08 06:45 UTC)
Platform Info:
OS: Windows (x86_64-w64-mingw32)
CPU: 48 × AMD EPYC 7443 24-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-13.0.1 (ORCJIT, znver3)
Threads: 1 on 96 virtual cores
nothing
ℹ Starting Julia with 2 threads
✔ Starting Julia with 2 threads [4.8s]
ℹ Activating package environment
Precompiling project...
✓ Zstd_jll
✗ GLM
✓ CodecZstd
✓ InlineStrings
✓ TimeZones
✓ Arrow
✓ MixedModelsDatasets
✓ NLopt
✗ MixedModels
✗ JlmerClusterPerm
7 dependencies successfully precompiled in 223 seconds. 97 already precompiled.
5 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages
✔ Activating package environment [3m 49.7s]
Status `D:\temp\2025_02_25_01_50_00_15700\Rtmpawqj93\julia\Project.toml`
⌅ [a93c6f00] DataFrames v1.3.6
[31c24e10] Distributions v0.25.117
⌅ [38e38edf] GLM v1.8.3
[2a59065a] JlmerClusterPerm v0.1.1 `JlmerClusterPerm`
⌅ [ff71e718] MixedModels v4.28.0
⌅ [92933f4c] ProgressMeter v1.7.2
⌅ [74087812] Random123 v1.6.2
⌃ [2913bbd2] StatsBase v0.33.21
[3eaba693] StatsModels v0.7.4
[fd094767] Suppressor v0.2.8
[9a3f8284] Random
Info Packages marked with ⌃ and ⌅ have new versions available, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated`
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deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "RecipesBase", "Scratch", "TZJData", "Unicode", "p7zip_jll"]
git-tree-sha1 = "38bb1023fb94bfbaf2a29e1e0de4bbba6fe0bf6d"
uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53"
version = "1.21.2"
[[deps.TranscodingStreams]]
git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
version = "0.11.3"
[[deps.TypedTables]]
deps = ["Adapt", "Dictionaries", "Indexing", "SplitApplyCombine", "Tables", "Unicode"]
git-tree-sha1 = "84fd7dadde577e01eb4323b7e7b9cb51c62c60d4"
uuid = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9"
version = "1.4.6"
[[deps.UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
[[deps.Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
[[deps.Zlib_jll]]
deps = ["Libdl"]
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.12+3"
[[deps.Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.5.7+1"
[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl", "OpenBLAS_jll"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.1.1+0"
[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
version = "1.48.0+0"
[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.4.0+0"
i Starting Julia with 2 threads
v Starting Julia with 2 threads [5s]
i Activating package environment
v Activating package environment [6.4s]
i Running package setup scripts (1/11)
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsFuns [4c63d2b9-4356-54db-8cca-17b64c39e42c]
│ exception = Required dependency SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] failed to load from a cache file.
└ @ Base loading.jl:1349
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsModels [3eaba693-59b7-5ba5-a881-562e759f1c8d]
│ exception = ErrorException("Required dependency SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] failed to load from a cache file.")
└ @ Base loading.jl:1349
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsFuns [4c63d2b9-4356-54db-8cca-17b64c39e42c]
│ exception = ErrorException("Required dependency SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] failed to load from a cache file.")
└ @ Base loading.jl:1349
i Running package setup scripts (6/11)
x Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>.
i Running package setup scripts (6/11)
x Running package setup scripts (6/11) [18.9s]
Starting Julia ...
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsFuns [4c63d2b9-4356-54db-8cca-17b64c39e42c]
│ exception = Required dependency SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] failed to load from a cache file.
└ @ Base loading.jl:1349
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsModels [3eaba693-59b7-5ba5-a881-562e759f1c8d]
│ exception = ErrorException("Required dependency SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] failed to load from a cache file.")
└ @ Base loading.jl:1349
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsFuns [4c63d2b9-4356-54db-8cca-17b64c39e42c]
│ exception = ErrorException("Required dependency SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] failed to load from a cache file.")
└ @ Base loading.jl:1349
✖ Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>.
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 5 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
• On CRAN (7): 'test-jlmer.R:1:1', 'test-julia_rng.R:1:1',
'test-permute.R:1:1', 'test-progress.R:1:1', 'test-singularity.R:1:1',
'test-threshold_search.R:1:1', 'test-timewise_statistics.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-aaa-b-setup.R:7:3'): Setup with seed works (use 2 for testing) ──
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: ArgumentError: Package Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] is required but does not seem to be installed:
- Run `Pkg.instantiate()` to install all recorded dependencies.
Stacktrace:
[1] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1306
[2] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[3] macro expansion
@ .\loading.jl:1180 [inlined]
[4] macro expansion
@ .\lock.jl:223 [inlined]
[5] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[6] eval
@ .\boot.jl:368 [inlined]
[7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[8] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[9] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150
[10] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[11] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[12] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67
[13] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55
[14] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185
[15] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_true(...) at test-aaa-b-setup.R:7:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::jlmerclusterperm_setup(...)
5. └─jlmerclusterperm:::setup_with_progress(...)
6. ├─base::withCallingHandlers(...)
7. └─jlmerclusterperm:::source_jl(verbose = verbose)
8. └─JuliaConnectoR::juliaEval(jl_pkgs[i])
9. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
10. ├─base::tryCatch(...)
11. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
12. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
13. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
14. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
15. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Failure ('test-aaa-b-setup.R:13:3'): RNG initializes to seed=1 counter=0 ────
get_rng_seed() (`actual`) not equal to 1 (`expected`).
`actual` is NULL
`expected` is a double vector (1)
── Error ('test-aaa-b-setup.R:14:3'): RNG initializes to seed=1 counter=0 ──────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: UndefVarError: rng not defined
Stacktrace:
[1] top-level scope
@ string:1
[2] eval
@ .\boot.jl:368 [inlined]
[3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[4] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[5] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150
[6] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[7] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[8] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67
[9] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55
[10] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185
[11] serve(port_hint::Int64; multiclient::Bool, portfile::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:152
[12] top-level scope
@ D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\main.jl:23
[13] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[14] exec_options(opts::Base.JLOptions)
@ Base .\client.jl:303
[15] _start()
@ Base .\client.jl:522
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_equal(get_rng_state(), 0) at test-aaa-b-setup.R:14:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::get_rng_state()
5. └─JuliaConnectoR::juliaEval("Int(rng.ctr1)")
6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
7. ├─base::tryCatch(...)
8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
12. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Error ('test-clusterpermute.R:3:1'): (code run outside of `test_that()`) ────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: ArgumentError: Package Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] is required but does not seem to be installed:
- Run `Pkg.instantiate()` to install all recorded dependencies.
Stacktrace:
[1] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1306
[2] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[3] macro expansion
@ .\loading.jl:1180 [inlined]
[4] macro expansion
@ .\lock.jl:223 [inlined]
[5] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[6] eval
@ .\boot.jl:368 [inlined]
[7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[8] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[9] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150
[10] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[11] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[12] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67
[13] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55
[14] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185
[15] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:1
Backtrace:
▆
1. └─jlmerclusterperm::jlmerclusterperm_setup(...) at test-clusterpermute.R:3:1
2. └─jlmerclusterperm:::setup_with_progress(...)
3. ├─base::withCallingHandlers(...)
4. └─jlmerclusterperm:::source_jl(verbose = verbose)
5. └─JuliaConnectoR::juliaEval(jl_pkgs[i])
6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
7. ├─base::tryCatch(...)
8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
12. └─JuliaConnectoR:::handleCallbacksAndOutput()
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 5 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running 'testthat.R' [92s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(jlmerclusterperm)
>
> test_check("jlmerclusterperm")
Julia Version 1.11.3
Commit d63adeda50 (2025-01-21 19:42 UTC)
Build Info:
Official https://julialang.org/ release
Platform Info:
OS: Windows (x86_64-w64-mingw32)
CPU: 56 × Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz
WORD_SIZE: 64
LLVM: libLLVM-16.0.6 (ORCJIT, broadwell)
Threads: 1 default, 0 interactive, 1 GC (on 56 virtual cores)
nothing
ℹ Starting Julia with 2 threads
Updating registry at `C:\Users\CRAN\.julia\registries\General.toml`
Resolving package versions...
Updating `C:\Users\CRAN\.julia\environments\v1.11\Project.toml`
[bd369af6] + Tables v1.12.0
Updating `C:\Users\CRAN\.julia\environments\v1.11\Manifest.toml`
[9a962f9c] + DataAPI v1.16.0
[e2d170a0] + DataValueInterfaces v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[bac558e1] + OrderedCollections v1.8.0
[3783bdb8] + TableTraits v1.0.1
[bd369af6] + Tables v1.12.0
Precompiling project...
DataValueInterfaces Being precompiled by another process (pid: 27540, pidfile: C:\Users\CRAN\.julia\compiled\v1.11\DataValueInterfaces\9Lpkp_WrxsC.ji.pidfile)
OrderedCollections Being precompiled by another process (pid: 27540, pidfile: C:\Users\CRAN\.julia\compiled\v1.11\OrderedCollections\LtT3J_WrxsC.ji.pidfile)
DataAPI Being precompiled by another process (pid: 27540, pidfile: C:\Users\CRAN\.julia\compiled\v1.11\DataAPI\3a8mN_WrxsC.ji.pidfile)
IteratorInterfaceExtensions Being precompiled by another process (pid: 27540, pidfile: C:\Users\CRAN\.julia\compiled\v1.11\IteratorInterfaceExtensions\N0h8q_WrxsC.ji.pidfile)
816.6 ms ✓ IteratorInterfaceExtensions
848.6 ms ✓ DataAPI
1155.7 ms ✓ DataValueInterfaces
TableTraits Being precompiled by another process (pid: 27540, pidfile: C:\Users\CRAN\.julia\compiled\v1.11\TableTraits\I6SaN_WrxsC.ji.pidfile)
2695.8 ms ✓ OrderedCollections
1863.6 ms ✓ TableTraits
Tables Being precompiled by another process (pid: 27540, pidfile: C:\Users\CRAN\.julia\compiled\v1.11\Tables\Z804B_WrxsC.ji.pidfile)
1971.8 ms ✓ Tables
6 dependencies successfully precompiled in 5 seconds
✔ Starting Julia with 2 threads [31.8s]
ℹ Activating package environment
✖ Activating package environment [21.3s]
i Starting Julia with 2 threads
v Starting Julia with 2 threads [10.1s]
i Activating package environment
x Activating package environment [3s]
[ FAIL 5 | WARN 0 | SKIP 7 | PASS 5 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
• On CRAN (7): 'test-jlmer.R:1:1', 'test-julia_rng.R:1:1',
'test-permute.R:1:1', 'test-progress.R:1:1', 'test-singularity.R:1:1',
'test-threshold_search.R:1:1', 'test-timewise_statistics.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-aaa-a-logging.R:7:1'): (code run outside of `test_that()`) ─────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: `Distributions=31c24e10-a181-5473-b8eb-7969acd0382f` depends on `Test=8dfed614-e22c-5e08-85e1-65c5234f0b40`, but no such entry exists in the manifest.
Stacktrace:
[1] pkgerror(::String, ::Vararg{String})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:68
[2] validate_manifest(julia_version::VersionNumber, manifest_format::VersionNumber, stage1::Dict{String, Vector{Pkg.Types.Stage1}}, other::Dict{String, Any})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:135
[3] Pkg.Types.Manifest(raw::Dict{String, Any}, f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:203
[4] read_manifest(f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:226
[5] Pkg.Types.EnvCache(env::Nothing)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:373
[6] EnvCache
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:351 [inlined]
[7] #show_update#170
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Operations.jl:2549 [inlined]
[8] develop(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Set{Base.UUID}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform)
@ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Operations.jl:1495
[9] develop
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Operations.jl:1480 [inlined]
[10] develop(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; shared::Bool, preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, kwargs::@Kwargs{io::Base.DevNull})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:258
[11] develop(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.DevNull, kwargs::@Kwargs{})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:159
[12] develop
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:148 [inlined]
[13] develop
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:146 [inlined]
[14] develop(; name::Nothing, uuid::Nothing, version::Nothing, url::Nothing, rev::Nothing, path::String, mode::Pkg.Types.PackageMode, subdir::Nothing, kwargs::@Kwargs{io::Base.DevNull})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:176
[15] top-level scope
@ string:1
[16] eval
@ .\boot.jl:430 [inlined]
[17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:2734
[18] include_string (repeats 2 times)
@ .\loading.jl:2744 [inlined]
[19] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[20] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::@Kwargs{})
@ Base .\essentials.jl:1055
[21] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:1052
[22] evaluate!
@ D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67 [inlined]
[23] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[24] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[25] serve(port_hint::Int64; multiclient::Bool, portfile::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:152
[26] top-level scope
@ D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\main.jl:23
[27] include(mod::Module, _path::String)
@ Base .\Base.jl:557
[28] exec_options(opts::Base.JLOptions)
@ Base .\client.jl:323
[29] _start()
@ Base .\client.jl:531
in expression starting at string:1
Backtrace:
▆
1. └─jlmerclusterperm:::set_projenv(cache_dir = tempdir(), verbose = TRUE) at test-aaa-a-logging.R:7:1
2. └─JuliaConnectoR::juliaEval("Pkg.develop(path = \"JlmerClusterPerm\", io = devnull)")
3. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
4. ├─base::tryCatch(...)
5. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
8. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
9. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Error ('test-aaa-b-setup.R:7:3'): Setup with seed works (use 2 for testing) ──
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: `Distributions=31c24e10-a181-5473-b8eb-7969acd0382f` depends on `Test=8dfed614-e22c-5e08-85e1-65c5234f0b40`, but no such entry exists in the manifest.
Stacktrace:
[1] pkgerror(::String, ::Vararg{String})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:68
[2] validate_manifest(julia_version::VersionNumber, manifest_format::VersionNumber, stage1::Dict{String, Vector{Pkg.Types.Stage1}}, other::Dict{String, Any})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:135
[3] Pkg.Types.Manifest(raw::Dict{String, Any}, f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:203
[4] read_manifest(f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:226
[5] Pkg.Types.EnvCache(env::Nothing)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:373
[6] EnvCache
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:351 [inlined]
[7] add_snapshot_to_undo(env::Nothing)
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1496
[8] add_snapshot_to_undo
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1492 [inlined]
[9] activate(path::String; shared::Bool, temp::Bool, io::Base.DevNull)
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1372
[10] top-level scope
@ string:1
[11] eval
@ .\boot.jl:430 [inlined]
[12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:2734
[13] include_string (repeats 2 times)
@ .\loading.jl:2744 [inlined]
[14] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[15] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::@Kwargs{})
@ Base .\essentials.jl:1055
[16] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:1052
[17] evaluate!
@ D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67 [inlined]
[18] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[19] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[20] (::Main.RConnector.var"#3#5")()
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:145
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_true(...) at test-aaa-b-setup.R:7:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::jlmerclusterperm_setup(...)
5. └─jlmerclusterperm:::setup_with_progress(...)
6. └─jlmerclusterperm:::set_projenv(cache_dir = cache_dir, verbose = verbose)
7. └─JuliaConnectoR::juliaEval("Pkg.activate(\".\", io = devnull)")
8. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
9. ├─base::tryCatch(...)
10. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
11. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
12. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
13. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
14. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Failure ('test-aaa-b-setup.R:13:3'): RNG initializes to seed=1 counter=0 ────
get_rng_seed() (`actual`) not equal to 1 (`expected`).
`actual` is NULL
`expected` is a double vector (1)
── Error ('test-aaa-b-setup.R:14:3'): RNG initializes to seed=1 counter=0 ──────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: UndefVarError: `rng` not defined in `Main`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ string:1
[2] eval
@ .\boot.jl:430 [inlined]
[3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:2734
[4] include_string (repeats 2 times)
@ .\loading.jl:2744 [inlined]
[5] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[6] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::@Kwargs{})
@ Base .\essentials.jl:1055
[7] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:1052
[8] evaluate!
@ D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67 [inlined]
[9] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[10] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[11] (::Main.RConnector.var"#3#5")()
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:145
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_equal(get_rng_state(), 0) at test-aaa-b-setup.R:14:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::get_rng_state()
5. └─JuliaConnectoR::juliaEval("Int(rng.ctr1)")
6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
7. ├─base::tryCatch(...)
8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
12. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Error ('test-clusterpermute.R:3:1'): (code run outside of `test_that()`) ────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: `Distributions=31c24e10-a181-5473-b8eb-7969acd0382f` depends on `Test=8dfed614-e22c-5e08-85e1-65c5234f0b40`, but no such entry exists in the manifest.
Stacktrace:
[1] pkgerror(::String, ::Vararg{String})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:68
[2] validate_manifest(julia_version::VersionNumber, manifest_format::VersionNumber, stage1::Dict{String, Vector{Pkg.Types.Stage1}}, other::Dict{String, Any})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:135
[3] Pkg.Types.Manifest(raw::Dict{String, Any}, f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:203
[4] read_manifest(f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:226
[5] Pkg.Types.EnvCache(env::Nothing)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:373
[6] EnvCache
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:351 [inlined]
[7] add_snapshot_to_undo(env::Nothing)
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1496
[8] add_snapshot_to_undo
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1492 [inlined]
[9] activate(path::String; shared::Bool, temp::Bool, io::Base.DevNull)
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1372
[10] top-level scope
@ string:1
[11] eval
@ .\boot.jl:430 [inlined]
[12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:2734
[13] include_string (repeats 2 times)
@ .\loading.jl:2744 [inlined]
[14] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[15] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::@Kwargs{})
@ Base .\essentials.jl:1055
[16] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:1052
[17] evaluate!
@ D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67 [inlined]
[18] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[19] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[20] (::Main.RConnector.var"#3#5")()
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:145
in expression starting at string:1
Backtrace:
▆
1. └─jlmerclusterperm::jlmerclusterperm_setup(...) at test-clusterpermute.R:3:1
2. └─jlmerclusterperm:::setup_with_progress(...)
3. └─jlmerclusterperm:::set_projenv(cache_dir = cache_dir, verbose = verbose)
4. └─JuliaConnectoR::juliaEval("Pkg.activate(\".\", io = devnull)")
5. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
6. ├─base::tryCatch(...)
7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
11. └─JuliaConnectoR:::handleCallbacksAndOutput()
[ FAIL 5 | WARN 0 | SKIP 7 | PASS 5 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64