Last updated on 2025-01-15 05:50:55 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| dsem | 3 | 2 | 8 |
| ecostate | 13 | ||
| phylosem | 4 | 9 |
Current CRAN status: ERROR: 3, NOTE: 2, OK: 8
Version: 1.4.0
Check: installed package size
Result: NOTE
installed size is 85.0Mb
sub-directories of 1Mb or more:
libs 84.3Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.4.0
Check: examples
Result: ERROR
Running examples in ‘dsem-Ex.R’ failed
The error most likely occurred in:
> ### Name: dsemRTMB
> ### Title: Fit dynamic structural equation model
> ### Aliases: dsemRTMB
>
> ### ** Examples
>
> # Define model
> sem = "
+ # Link, lag, param_name
+ cprofits -> consumption, 0, a1
+ cprofits -> consumption, 1, a2
+ pwage -> consumption, 0, a3
+ gwage -> consumption, 0, a3
+ cprofits -> invest, 0, b1
+ cprofits -> invest, 1, b2
+ capital -> invest, 0, b3
+ gnp -> pwage, 0, c2
+ gnp -> pwage, 1, c3
+ time -> pwage, 0, c1
+ "
>
> # Load data
> data(KleinI, package="AER")
> TS = ts(data.frame(KleinI, "time"=time(KleinI) - 1931))
> tsdata = TS[,c("time","gnp","pwage","cprofits",'consumption',
+ "gwage","invest","capital")]
>
> # Fit model
> fit = dsemRTMB( sem=sem,
+ tsdata = tsdata,
+ estimate_delta0 = TRUE,
+ control = dsem_control(quiet=TRUE) )
Read 10 records
Error in advector(e1) :
Invalid argument to 'advector' (lost class attribute?)
Calls: dsemRTMB ... dgmrf -> as.vector -> Ops.advector -> Arith2 -> advector
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
>
> library(testthat)
> library(dsem)
>
> # Run tests
> testthat::test_check("dsem")
Read 5 records
Coefficient_name Number_of_coefficients Type
1 beta_z 7 Fixed
2 delta0_j 2 Fixed
3 lnsigma_j 2 Fixed
4 mu_j 2 Random
5 x_tj 122 Random
Read 5 records
Coefficient_name Number_of_coefficients Type
1 beta_z 7 Fixed
2 delta0_j 2 Fixed
3 mu_j 2 Random
4 x_tj 122 Random
Read 5 records
Coefficient_name Number_of_coefficients Type
1 beta_z 7 Fixed
2 delta0_j 2 Fixed
3 mu_j 2 Random
4 x_tj 122 Random
Read 5 records
Coefficient_name Number_of_coefficients Type
1 beta_z 6 Fixed
2 delta0_j 2 Fixed
3 mu_j 2 Random
Read 4 records
Coefficient_name Number_of_coefficients Type
1 beta_z 6 Fixed
2 delta0_j 2 Fixed
3 mu_j 2 Random
Read 4 records
Coefficient_name Number_of_coefficients Type
1 beta_z 6 Fixed
2 mu_j 2 Random
Read 4 records
Coefficient_name Number_of_coefficients Type
1 beta_z 6 Fixed
2 delta0_j 2 Fixed
3 mu_j 2 Random
Read 10 records
Coefficient_name Number_of_coefficients Type
1 beta_z 17 Fixed
2 mu_j 8 Random
Read 10 records
Read 0 records
Coefficient_name Number_of_coefficients Type
1 beta_z 2 Fixed
2 mu_j 2 Random
Read 2 records
Coefficient_name Number_of_coefficients Type
1 beta_z 2 Fixed
2 mu_j 2 Random
Read 16 records
Coefficient_name Number_of_coefficients Type
1 beta_z 24 Fixed
2 mu_j 8 Fixed
3 x_tj 232 Random
Read 4 records
Coefficient_name Number_of_coefficients Type
1 beta_z 5 Fixed
2 mu_j 4 Random
Read 4 records
Read 16 records
[ FAIL 5 | WARN 12 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-gmrf-versions.R:75:3'): dsem constant-variance options ──────
apply(margvar, MARGIN = 2, FUN = sd) not equal to c(0, 0).
2/2 mismatches (average diff: NaN)
[1] NA - 0 == NA
[2] NA - 0 == NA
── Failure ('test-gmrf-versions.R:94:3'): dsem constant-variance options ──────
apply(margvar, MARGIN = 2, FUN = sd) not equal to c(0, 0).
2/2 mismatches (average diff: NaN)
[1] NA - 0 == NA
[2] NA - 0 == NA
── Error ('test-platform.R:34:3'): dsem example is working ────────────────────
Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?)
Backtrace:
▆
1. └─dsem::dsemRTMB(sem = sem, tsdata = tsdata, control = dsem_control(getsd = FALSE)) at test-platform.R:34:3
2. └─RTMB::MakeADFun(...)
3. └─obj$retape()
4. └─RTMB:::MakeADFunObject(...)
5. └─RTMB:::.MakeTape(mapfunc, obj$env$par)
6. └─RTMB (local) f(x)
7. └─dsem (local) func(pl)
8. └─dsem (local) f(p, ...)
9. └─RTMB::dgmrf(...)
10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu))
11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
12. └─RTMB::advector(e2)
── Error ('test-platform.R:160:3'): Fixing parameters works ───────────────────
Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?)
Backtrace:
▆
1. └─dsem::dsemRTMB(sem = sem, tsdata = tsdata, control = dsem_control(getsd = FALSE)) at test-platform.R:160:3
2. └─RTMB::MakeADFun(...)
3. └─obj$retape()
4. └─RTMB:::MakeADFunObject(...)
5. └─RTMB:::.MakeTape(mapfunc, obj$env$par)
6. └─RTMB (local) f(x)
7. └─dsem (local) func(pl)
8. └─dsem (local) f(p, ...)
9. └─RTMB::dgmrf(...)
10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu))
11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
12. └─RTMB::advector(e2)
── Error ('test-priors.R:43:3'): priors interface is working ──────────────────
Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?)
Backtrace:
▆
1. └─dsem::dsemRTMB(...) at test-priors.R:43:3
2. └─RTMB::MakeADFun(...)
3. └─obj$retape()
4. └─RTMB:::MakeADFunObject(...)
5. └─RTMB:::.MakeTape(mapfunc, obj$env$par)
6. └─RTMB (local) f(x)
7. └─dsem (local) func(pl)
8. └─dsem (local) f(p, ...)
9. └─RTMB::dgmrf(...)
10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu))
11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
12. └─RTMB::advector(e2)
[ FAIL 5 | WARN 12 | SKIP 0 | PASS 4 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
>
> library(testthat)
> library(dsem)
>
> # Run tests
> testthat::test_check("dsem")
Read 5 records
Coefficient_name Number_of_coefficients Type
1 beta_z 7 Fixed
2 delta0_j 2 Fixed
3 lnsigma_j 2 Fixed
4 mu_j 2 Random
5 x_tj 122 Random
Read 5 records
Coefficient_name Number_of_coefficients Type
1 beta_z 7 Fixed
2 delta0_j 2 Fixed
3 mu_j 2 Random
4 x_tj 122 Random
Read 5 records
Coefficient_name Number_of_coefficients Type
1 beta_z 7 Fixed
2 delta0_j 2 Fixed
3 mu_j 2 Random
4 x_tj 122 Random
Read 5 records
Coefficient_name Number_of_coefficients Type
1 beta_z 6 Fixed
2 delta0_j 2 Fixed
3 mu_j 2 Random
Read 4 records
Coefficient_name Number_of_coefficients Type
1 beta_z 6 Fixed
2 delta0_j 2 Fixed
3 mu_j 2 Random
Read 4 records
Coefficient_name Number_of_coefficients Type
1 beta_z 6 Fixed
2 mu_j 2 Random
Read 4 records
Coefficient_name Number_of_coefficients Type
1 beta_z 6 Fixed
2 delta0_j 2 Fixed
3 mu_j 2 Random
Read 10 records
Coefficient_name Number_of_coefficients Type
1 beta_z 17 Fixed
2 mu_j 8 Random
Read 10 records
Read 0 records
Coefficient_name Number_of_coefficients Type
1 beta_z 2 Fixed
2 mu_j 2 Random
Read 2 records
Coefficient_name Number_of_coefficients Type
1 beta_z 2 Fixed
2 mu_j 2 Random
Read 16 records
Coefficient_name Number_of_coefficients Type
1 beta_z 24 Fixed
2 mu_j 8 Fixed
3 x_tj 232 Random
Read 4 records
Coefficient_name Number_of_coefficients Type
1 beta_z 5 Fixed
2 mu_j 4 Random
Read 4 records
Read 16 records
[ FAIL 5 | WARN 12 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-gmrf-versions.R:75:3'): dsem constant-variance options ──────
apply(margvar, MARGIN = 2, FUN = sd) not equal to c(0, 0).
2/2 mismatches (average diff: NaN)
[1] NA - 0 == NA
[2] NA - 0 == NA
── Failure ('test-gmrf-versions.R:94:3'): dsem constant-variance options ──────
apply(margvar, MARGIN = 2, FUN = sd) not equal to c(0, 0).
2/2 mismatches (average diff: NaN)
[1] NA - 0 == NA
[2] NA - 0 == NA
── Error ('test-platform.R:34:3'): dsem example is working ────────────────────
Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?)
Backtrace:
▆
1. └─dsem::dsemRTMB(sem = sem, tsdata = tsdata, control = dsem_control(getsd = FALSE)) at test-platform.R:34:3
2. └─RTMB::MakeADFun(...)
3. └─obj$retape()
4. └─RTMB:::MakeADFunObject(...)
5. └─RTMB:::.MakeTape(mapfunc, obj$env$par)
6. └─RTMB (local) f(x)
7. └─dsem (local) func(pl)
8. └─dsem (local) f(p, ...)
9. └─RTMB::dgmrf(...)
10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu))
11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
12. └─RTMB::advector(e2)
── Error ('test-platform.R:160:3'): Fixing parameters works ───────────────────
Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?)
Backtrace:
▆
1. └─dsem::dsemRTMB(sem = sem, tsdata = tsdata, control = dsem_control(getsd = FALSE)) at test-platform.R:160:3
2. └─RTMB::MakeADFun(...)
3. └─obj$retape()
4. └─RTMB:::MakeADFunObject(...)
5. └─RTMB:::.MakeTape(mapfunc, obj$env$par)
6. └─RTMB (local) f(x)
7. └─dsem (local) func(pl)
8. └─dsem (local) f(p, ...)
9. └─RTMB::dgmrf(...)
10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu))
11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
12. └─RTMB::advector(e2)
── Error ('test-priors.R:43:3'): priors interface is working ──────────────────
Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?)
Backtrace:
▆
1. └─dsem::dsemRTMB(...) at test-priors.R:43:3
2. └─RTMB::MakeADFun(...)
3. └─obj$retape()
4. └─RTMB:::MakeADFunObject(...)
5. └─RTMB:::.MakeTape(mapfunc, obj$env$par)
6. └─RTMB (local) f(x)
7. └─dsem (local) func(pl)
8. └─dsem (local) f(p, ...)
9. └─RTMB::dgmrf(...)
10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu))
11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
12. └─RTMB::advector(e2)
[ FAIL 5 | WARN 12 | SKIP 0 | PASS 4 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 1.4.0
Check: tests
Result: ERROR
Running 'testthat.R' [16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
>
>
> library(testthat)
> library(dsem)
>
> # Run tests
> testthat::test_check("dsem")
Read 5 records
Coefficient_name Number_of_coefficients Type
1 beta_z 7 Fixed
2 delta0_j 2 Fixed
3 lnsigma_j 2 Fixed
4 mu_j 2 Random
5 x_tj 122 Random
Read 5 records
Coefficient_name Number_of_coefficients Type
1 beta_z 7 Fixed
2 delta0_j 2 Fixed
3 mu_j 2 Random
4 x_tj 122 Random
Read 5 records
Coefficient_name Number_of_coefficients Type
1 beta_z 7 Fixed
2 delta0_j 2 Fixed
3 mu_j 2 Random
4 x_tj 122 Random
Read 5 records
Coefficient_name Number_of_coefficients Type
1 beta_z 6 Fixed
2 delta0_j 2 Fixed
3 mu_j 2 Random
Read 4 records
Coefficient_name Number_of_coefficients Type
1 beta_z 6 Fixed
2 delta0_j 2 Fixed
3 mu_j 2 Random
Read 4 records
Coefficient_name Number_of_coefficients Type
1 beta_z 6 Fixed
2 mu_j 2 Random
Read 4 records
Coefficient_name Number_of_coefficients Type
1 beta_z 6 Fixed
2 delta0_j 2 Fixed
3 mu_j 2 Random
Read 10 records
Coefficient_name Number_of_coefficients Type
1 beta_z 17 Fixed
2 mu_j 8 Random
Read 10 records
Read 0 records
Coefficient_name Number_of_coefficients Type
1 beta_z 2 Fixed
2 mu_j 2 Random
Read 2 records
Coefficient_name Number_of_coefficients Type
1 beta_z 2 Fixed
2 mu_j 2 Random
Read 16 records
Coefficient_name Number_of_coefficients Type
1 beta_z 24 Fixed
2 mu_j 8 Fixed
3 x_tj 232 Random
Read 4 records
Coefficient_name Number_of_coefficients Type
1 beta_z 5 Fixed
2 mu_j 4 Random
Read 4 records
Read 16 records
[ FAIL 5 | WARN 12 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-gmrf-versions.R:75:3'): dsem constant-variance options ──────
apply(margvar, MARGIN = 2, FUN = sd) not equal to c(0, 0).
2/2 mismatches (average diff: NaN)
[1] NA - 0 == NA
[2] NA - 0 == NA
── Failure ('test-gmrf-versions.R:94:3'): dsem constant-variance options ──────
apply(margvar, MARGIN = 2, FUN = sd) not equal to c(0, 0).
2/2 mismatches (average diff: NaN)
[1] NA - 0 == NA
[2] NA - 0 == NA
── Error ('test-platform.R:34:3'): dsem example is working ────────────────────
Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?)
Backtrace:
▆
1. └─dsem::dsemRTMB(sem = sem, tsdata = tsdata, control = dsem_control(getsd = FALSE)) at test-platform.R:34:3
2. └─RTMB::MakeADFun(...)
3. └─obj$retape()
4. └─RTMB:::MakeADFunObject(...)
5. └─RTMB:::.MakeTape(mapfunc, obj$env$par)
6. └─RTMB (local) f(x)
7. └─dsem (local) func(pl)
8. └─dsem (local) f(p, ...)
9. └─RTMB::dgmrf(...)
10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu))
11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
12. └─RTMB::advector(e2)
── Error ('test-platform.R:160:3'): Fixing parameters works ───────────────────
Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?)
Backtrace:
▆
1. └─dsem::dsemRTMB(sem = sem, tsdata = tsdata, control = dsem_control(getsd = FALSE)) at test-platform.R:160:3
2. └─RTMB::MakeADFun(...)
3. └─obj$retape()
4. └─RTMB:::MakeADFunObject(...)
5. └─RTMB:::.MakeTape(mapfunc, obj$env$par)
6. └─RTMB (local) f(x)
7. └─dsem (local) func(pl)
8. └─dsem (local) f(p, ...)
9. └─RTMB::dgmrf(...)
10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu))
11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
12. └─RTMB::advector(e2)
── Error ('test-priors.R:43:3'): priors interface is working ──────────────────
Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?)
Backtrace:
▆
1. └─dsem::dsemRTMB(...) at test-priors.R:43:3
2. └─RTMB::MakeADFun(...)
3. └─obj$retape()
4. └─RTMB:::MakeADFunObject(...)
5. └─RTMB:::.MakeTape(mapfunc, obj$env$par)
6. └─RTMB (local) f(x)
7. └─dsem (local) func(pl)
8. └─dsem (local) f(p, ...)
9. └─RTMB::dgmrf(...)
10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu))
11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
12. └─RTMB::advector(e2)
[ FAIL 5 | WARN 12 | SKIP 0 | PASS 4 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 4, OK: 9
Version: 1.1.4
Check: installed package size
Result: NOTE
installed size is 62.9Mb
sub-directories of 1Mb or more:
libs 62.1Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64