CRAN Package Check Results for Maintainer ‘Gokmen Zararsiz <gokmen.zararsiz at gmail.com>’

Last updated on 2025-03-20 06:54:14 CET.

Package	ERROR	OK
dtComb	1	14

Package dtComb

Current CRAN status: ERROR: 1, OK: 14

Version: 1.0.5
Check: examples
Result: ERROR Running examples in ‘dtComb-Ex.R’ failed The error most likely occurred in: > ### Name: linComb > ### Title: Combine two diagnostic tests with several linear combination > ### methods. > ### Aliases: linComb > > ### ** Examples > > # call data > data(laparoscopy) > > # define the function parameters > markers <- laparoscopy[, -1] > status <- factor(laparoscopy$group, levels = c("not_needed", "needed")) > event <- "needed" > > score1 <- linComb( + markers = markers, status = status, event = event, + method = "logistic", resample = "none", show.plot = TRUE, + standardize = "none", direction = "<", cutoff.method = "Youden" + ) Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called ‘systemfonts’ Calls: linComb ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Flavor: r-oldrel-macos-arm64

Version: 1.0.5
Check: tests
Result: ERROR Running ‘testthat.R’ [2s/2s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(dtComb) > # require(APtools) > # # library(usethis) > > test_check("dtComb") [ FAIL 5 | WARN 0 | SKIP 0 | PASS 23 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-linComb.R:31:3'): (code run outside of `test_that()`) ────────── <packageNotFoundError/error/condition> Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts' Backtrace: ▆ 1. ├─dtComb::linComb(...) at test-linComb.R:31:3 2. │ └─dtComb:::rocsum(...) 3. └─base::loadNamespace(x) 4. ├─base::namespaceImportFrom(...) 5. │ └─base::asNamespace(ns) 6. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 7. ├─base::namespaceImportFrom(...) 8. │ └─base::asNamespace(ns) 9. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 10. ├─base::namespaceImportFrom(...) 11. │ └─base::asNamespace(ns) 12. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 13. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 14. └─base (local) withOneRestart(expr, restarts[[1L]]) 15. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test-mathComb.R:31:3'): (code run outside of `test_that()`) ───────── <packageNotFoundError/error/condition> Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts' Backtrace: ▆ 1. ├─dtComb::mathComb(...) at test-mathComb.R:31:3 2. │ └─dtComb:::rocsum(...) 3. └─base::loadNamespace(x) 4. ├─base::namespaceImportFrom(...) 5. │ └─base::asNamespace(ns) 6. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 7. ├─base::namespaceImportFrom(...) 8. │ └─base::asNamespace(ns) 9. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 10. ├─base::namespaceImportFrom(...) 11. │ └─base::asNamespace(ns) 12. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 13. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 14. └─base (local) withOneRestart(expr, restarts[[1L]]) 15. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test-nonlinComb.R:29:3'): (code run outside of `test_that()`) ─────── <packageNotFoundError/error/condition> Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts' Backtrace: ▆ 1. ├─dtComb::nonlinComb(...) at test-nonlinComb.R:29:3 2. │ └─dtComb:::rocsum(...) 3. └─base::loadNamespace(x) 4. ├─base::namespaceImportFrom(...) 5. │ └─base::asNamespace(ns) 6. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 7. ├─base::namespaceImportFrom(...) 8. │ └─base::asNamespace(ns) 9. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 10. ├─base::namespaceImportFrom(...) 11. │ └─base::asNamespace(ns) 12. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 13. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 14. └─base (local) withOneRestart(expr, restarts[[1L]]) 15. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test-predComb.R:37:3'): (code run outside of `test_that()`) ───────── <packageNotFoundError/error/condition> Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts' Backtrace: ▆ 1. ├─dtComb::linComb(...) at test-predComb.R:37:3 2. │ └─dtComb:::rocsum(...) 3. └─base::loadNamespace(x) 4. ├─base::namespaceImportFrom(...) 5. │ └─base::asNamespace(ns) 6. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 7. ├─base::namespaceImportFrom(...) 8. │ └─base::asNamespace(ns) 9. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 10. ├─base::namespaceImportFrom(...) 11. │ └─base::asNamespace(ns) 12. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 13. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 14. └─base (local) withOneRestart(expr, restarts[[1L]]) 15. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test-standardize.R:43:3'): (code run outside of `test_that()`) ────── <packageNotFoundError/error/condition> Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts' Backtrace: ▆ 1. ├─dtComb::linComb(...) at test-standardize.R:43:3 2. │ └─dtComb:::rocsum(...) 3. └─base::loadNamespace(x) 4. ├─base::namespaceImportFrom(...) 5. │ └─base::asNamespace(ns) 6. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 7. ├─base::namespaceImportFrom(...) 8. │ └─base::asNamespace(ns) 9. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 10. ├─base::namespaceImportFrom(...) 11. │ └─base::asNamespace(ns) 12. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 13. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 14. └─base (local) withOneRestart(expr, restarts[[1L]]) 15. └─base (local) doWithOneRestart(return(expr), restart) [ FAIL 5 | WARN 0 | SKIP 0 | PASS 23 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-arm64

Version: 1.0.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘vignettedtComb.Rnw’ using knitr Quitting from vignettedtComb.Rnw:221-235 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'systemfonts' --- Backtrace: x 1. +-dtComb::linComb(...) 2. | \-dtComb:::rocsum(...) 3. \-base::loadNamespace(x) 4. +-base::namespaceImportFrom(...) 5. | \-base::asNamespace(ns) 6. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 7. +-base::namespaceImportFrom(...) 8. | \-base::asNamespace(ns) 9. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 10. +-base::namespaceImportFrom(...) 11. | \-base::asNamespace(ns) 12. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 13. \-base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 14. \-base (local) withOneRestart(expr, restarts[[1L]]) 15. \-base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'vignettedtComb.Rnw' failed with diagnostics: there is no package called 'systemfonts' --- failed re-building ‘vignettedtComb.Rnw’ SUMMARY: processing the following file failed: ‘vignettedtComb.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-arm64