CRAN Package Check Results for Maintainer ‘Dennis Walvoort <dennis.Walvoort at wur.nl>’

Last updated on 2025-01-15 05:50:50 CET.

Package FAIL WARN NOTE OK
benthos 1 9 3
confidence 1 9 3
litteR 10 3
spcosa 10 3

Package benthos

Current CRAN status: FAIL: 1, NOTE: 9, OK: 3

Version: 1.3-8
Check: Rd files
Result: NOTE checkRd: (-1) hill.Rd:39: Lost braces; missing escapes or markup? 39 | \code{a} in {0, 1, 2} (see details))} | ^ checkRd: (-1) read_ambi.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_ambi.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_iti.Rd:39: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_iti.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_iti.Rd:41: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_iti.Rd:42: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_taxa.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_taxa.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_taxa.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_taxa.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_twn.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_twn.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_twn.Rd:38: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_twn.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) read_twn.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) read_twn.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) read_twn.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 1.3-8
Check: PDF version of manual
Result: FAIL Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: > > flush(stderr()); flush(stdout()) > > ### Name: total_abundance > ### Title: Total Abundance > ### Aliases: total_abundance total_abundance_ lnn lnn_ > > ### ** Examples > > total_abundance(count = c(4, 6)) [1] 10 > > > > > ### * <FOOTER> > ### > cleanEx() > options(digits = 7L) > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n") Time elapsed: 2.21 0.24 2.45 NA NA > grDevices::dev.off() null device 1 > ### > ### Local variables: *** > ### mode: outline-minor *** > ### outline-regexp: "\\(> \\)?### [*]+" *** > ### End: *** > quit('no') ======== End of example output (where/before crash/hang up occured ?) ======== Flavor: r-release-windows-x86_64

Package confidence

Current CRAN status: WARN: 1, NOTE: 9, OK: 3

Version: 1.1-2
Check: Rd files
Result: NOTE checkRd: (-1) mya.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mya.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mya.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mya.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mya.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 1.1-2
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: ... --- re-building ‘confidence.Rnw’ using knitr Error: processing vignette 'confidence.Rnw' failed with diagnostics: Running 'texi2dvi' on 'confidence.tex' failed. LaTeX errors: ! Undefined control sequence. l.197 \hlkwd{library}\hldef {(confidence)} ? ! Emergency stop. ! Emergency stop. l.197 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘confidence.Rnw’ SUMMARY: processing the following file failed: ‘confidence.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64

Package litteR

Current CRAN status: NOTE: 10, OK: 3

Version: 1.0.0
Check: Rd files
Result: NOTE checkRd: (-1) is_natural_number.Rd:17: Lost braces; missing escapes or markup? 17 | Test for natural numbers according to ISO 80000-2, that is the set {0, 1, 2, ...} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 1.0.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: list_duplicates.Rd: tibble Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package spcosa

Current CRAN status: NOTE: 10, OK: 3

Version: 0.4-2
Check: Rd files
Result: NOTE checkRd: (-1) NEWS.Rd:137: Escaped LaTeX specials: \& Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 0.4-2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: CompactStratification-class.Rd: SpatialPixels-class, SpatialPoints-class, SpatialPixelsDataFrame-class CompactStratificationEqualArea-class.Rd: SpatialPixels-class, SpatialPoints-class CompactStratificationPriorPoints-class.Rd: SpatialPoints-class, SpatialPixels-class SamplingPattern-class.Rd: SpatialPoints-class SamplingPatternCentroids-class.Rd: SpatialPoints-class SamplingPatternPriorPoints-class.Rd: SpatialPoints-class SamplingPatternPurposive-class.Rd: SpatialPoints-class SamplingPatternRandom-class.Rd: SpatialPoints-class SamplingPatternRandomComposite-class.Rd: SpatialPoints-class, SpatialPointsDataFrame-class SamplingPatternRandomSamplingUnits-class.Rd: SpatialPoints-class stratify-methods.Rd: SpatialPixels-class, SpatialGrid-class, SpatialPolygons-class, SpatialPoints-class Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64