Last updated on 2025-03-20 06:54:07 CET.
Package | ERROR | OK |
---|---|---|
hacksig | 9 | 6 |
Current CRAN status: ERROR: 9, OK: 6
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘hacksig.Rmd’ using rmarkdown
Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `msigdbr()`:
! Unknown subcollection.
---
Backtrace:
▆
1. ├─... %>% deframe()
2. ├─tibble::deframe(.)
3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname)))
4. ├─tidyr::nest(., genes = c(gene_symbol))
5. ├─dplyr::distinct(., gs_name, gene_symbol)
6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'hacksig.Rmd' failed with diagnostics:
Unknown subcollection.
--- failed re-building ‘hacksig.Rmd’
SUMMARY: processing the following file failed:
‘hacksig.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘hacksig.Rmd’ using rmarkdown
Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `msigdbr()`:
! Unknown subcollection.
---
Backtrace:
▆
1. ├─... %>% deframe()
2. ├─tibble::deframe(.)
3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname)))
4. ├─tidyr::nest(., genes = c(gene_symbol))
5. ├─dplyr::distinct(., gs_name, gene_symbol)
6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'hacksig.Rmd' failed with diagnostics:
Unknown subcollection.
--- failed re-building ‘hacksig.Rmd’
SUMMARY: processing the following file failed:
‘hacksig.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘hacksig.Rmd’ using rmarkdown
Quitting from lines 216-225 [unnamed-chunk-19] (hacksig.Rmd)
Error: processing vignette 'hacksig.Rmd' failed with diagnostics:
Unknown subcollection.
--- failed re-building ‘hacksig.Rmd’
SUMMARY: processing the following file failed:
‘hacksig.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64