CRAN Package Check Results for Package CoSMoS

Last updated on 2025-03-01 06:51:03 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.0 16.58 408.11 424.69 OK
r-devel-linux-x86_64-debian-gcc 2.1.0 10.73 296.52 307.25 OK
r-devel-linux-x86_64-fedora-clang 2.1.0 453.96 ERROR
r-devel-linux-x86_64-fedora-gcc 2.1.0 486.98 ERROR
r-devel-macos-arm64 2.1.0 329.00 OK
r-devel-macos-x86_64 2.1.0 460.00 OK
r-devel-windows-x86_64 2.1.0 15.00 380.00 395.00 OK
r-patched-linux-x86_64 2.1.0 15.88 400.82 416.70 OK
r-release-linux-x86_64 2.1.0 13.99 405.36 419.35 OK
r-release-macos-arm64 2.1.0 335.00 OK
r-release-macos-x86_64 2.1.0 346.00 OK
r-release-windows-x86_64 2.1.0 14.00 378.00 392.00 OK
r-oldrel-macos-arm64 2.1.0 OK
r-oldrel-macos-x86_64 2.1.0 362.00 OK
r-oldrel-windows-x86_64 2.1.0 19.00 456.00 475.00 OK

Check Details

Version: 2.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘vignette.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-1-1.png 672x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 20474 bytes Input file size = 21356 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19438 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19438 Output IDAT size = 19438 bytes (1036 bytes decrease) Output file size = 19516 bytes (1840 bytes = 8.62% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-2-1.png 672x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 23339 bytes Input file size = 24221 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22369 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 22278 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 22278 Output IDAT size = 22278 bytes (1061 bytes decrease) Output file size = 22356 bytes (1865 bytes = 7.70% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-3-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37082 bytes Input file size = 37208 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27056 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27056 Output IDAT size = 27056 bytes (10026 bytes decrease) Output file size = 27134 bytes (10074 bytes = 27.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-4-1.png 672x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 19757 bytes Input file size = 20639 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18578 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18578 Output IDAT size = 18578 bytes (1179 bytes decrease) Output file size = 18656 bytes (1983 bytes = 9.61% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-5-1.png 672x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 18842 bytes Input file size = 19724 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17605 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17605 Output IDAT size = 17605 bytes (1237 bytes decrease) Output file size = 17683 bytes (2041 bytes = 10.35% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-6-1.png 672x672 pixels, 8 bits/pixel, 217 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11997 bytes Input file size = 12750 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9880 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9880 Output IDAT size = 9880 bytes (2117 bytes decrease) Output file size = 9958 bytes (2792 bytes = 21.90% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-8-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 44889 bytes Input file size = 45027 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34971 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34971 Output IDAT size = 34971 bytes (9918 bytes decrease) Output file size = 35049 bytes (9978 bytes = 22.16% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-9-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 22713 bytes Input file size = 23595 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20094 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19978 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19978 Output IDAT size = 19978 bytes (2735 bytes decrease) Output file size = 20056 bytes (3539 bytes = 15.00% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-10-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 26845 bytes Input file size = 27739 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24075 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 24072 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 24072 Output IDAT size = 24072 bytes (2773 bytes decrease) Output file size = 24150 bytes (3589 bytes = 12.94% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-12-1.png 672x624 pixels, 3x8 bits/pixel, RGB Input IDAT size = 81409 bytes Input file size = 81595 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62186 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62186 Output IDAT size = 62186 bytes (19223 bytes decrease) Output file size = 62264 bytes (19331 bytes = 23.69% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-12-2.png 672x624 pixels, 3x8 bits/pixel, RGB Input IDAT size = 105471 bytes Input file size = 105693 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69214 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69214 Output IDAT size = 69214 bytes (36257 bytes decrease) Output file size = 69292 bytes (36401 bytes = 34.44% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-13-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 171387 bytes Input file size = 171705 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 116213 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 116213 Output IDAT size = 116213 bytes (55174 bytes decrease) Output file size = 116291 bytes (55414 bytes = 32.27% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-14-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 275248 bytes Input file size = 275722 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 150241 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 150241 Output IDAT size = 150241 bytes (125007 bytes decrease) Output file size = 150319 bytes (125403 bytes = 45.48% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-15-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 225581 bytes Input file size = 225983 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 116304 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 116304 Output IDAT size = 116304 bytes (109277 bytes decrease) Output file size = 116382 bytes (109601 bytes = 48.50% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-16-1.png 672x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 16986 bytes Input file size = 17868 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15999 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15999 Output IDAT size = 15999 bytes (987 bytes decrease) Output file size = 16077 bytes (1791 bytes = 10.02% decrease) Quitting from lines 405-412 [unnamed-chunk-17] (vignette.Rmd) Error: processing vignette 'vignette.Rmd' failed with diagnostics: 'to' must be a finite number --- failed re-building ‘vignette.Rmd’ SUMMARY: processing the following file failed: ‘vignette.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘vignette.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-1-1.png 672x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 20209 bytes Input file size = 21091 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19263 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19254 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19254 Output IDAT size = 19254 bytes (955 bytes decrease) Output file size = 19332 bytes (1759 bytes = 8.34% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-2-1.png 672x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 21096 bytes Input file size = 21978 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20108 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20108 Output IDAT size = 20108 bytes (988 bytes decrease) Output file size = 20186 bytes (1792 bytes = 8.15% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-3-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37082 bytes Input file size = 37208 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27056 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27056 Output IDAT size = 27056 bytes (10026 bytes decrease) Output file size = 27134 bytes (10074 bytes = 27.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-4-1.png 672x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 19438 bytes Input file size = 20320 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18435 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18435 Output IDAT size = 18435 bytes (1003 bytes decrease) Output file size = 18513 bytes (1807 bytes = 8.89% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-5-1.png 672x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 19405 bytes Input file size = 20287 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18235 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18235 Output IDAT size = 18235 bytes (1170 bytes decrease) Output file size = 18313 bytes (1974 bytes = 9.73% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-6-1.png 672x672 pixels, 8 bits/pixel, 213 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11808 bytes Input file size = 12549 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9856 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9856 Output IDAT size = 9856 bytes (1952 bytes decrease) Output file size = 9934 bytes (2615 bytes = 20.84% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-8-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 44889 bytes Input file size = 45027 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34971 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34971 Output IDAT size = 34971 bytes (9918 bytes decrease) Output file size = 35049 bytes (9978 bytes = 22.16% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-9-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 20973 bytes Input file size = 21855 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19010 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 18942 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 18942 Output IDAT size = 18942 bytes (2031 bytes decrease) Output file size = 19020 bytes (2835 bytes = 12.97% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-10-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 30400 bytes Input file size = 31294 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27606 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 27458 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 27181 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 27181 Output IDAT size = 27181 bytes (3219 bytes decrease) Output file size = 27259 bytes (4035 bytes = 12.89% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-12-1.png 672x624 pixels, 3x8 bits/pixel, RGB Input IDAT size = 80040 bytes Input file size = 80226 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 61290 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 61290 Output IDAT size = 61290 bytes (18750 bytes decrease) Output file size = 61368 bytes (18858 bytes = 23.51% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-12-2.png 672x624 pixels, 3x8 bits/pixel, RGB Input IDAT size = 125155 bytes Input file size = 125413 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82696 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82696 Output IDAT size = 82696 bytes (42459 bytes decrease) Output file size = 82774 bytes (42639 bytes = 34.00% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-13-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 171387 bytes Input file size = 171705 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 116213 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 116213 Output IDAT size = 116213 bytes (55174 bytes decrease) Output file size = 116291 bytes (55414 bytes = 32.27% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-14-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 275248 bytes Input file size = 275722 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 150241 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 150241 Output IDAT size = 150241 bytes (125007 bytes decrease) Output file size = 150319 bytes (125403 bytes = 45.48% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-15-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 225581 bytes Input file size = 225983 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 116304 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 116304 Output IDAT size = 116304 bytes (109277 bytes decrease) Output file size = 116382 bytes (109601 bytes = 48.50% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CoSMoS.Rcheck/vign_test/CoSMoS/vignettes/vignette_files/figure-html/unnamed-chunk-16-1.png 672x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 16986 bytes Input file size = 17868 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15999 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15999 Output IDAT size = 15999 bytes (987 bytes decrease) Output file size = 16077 bytes (1791 bytes = 10.02% decrease) Quitting from lines 405-412 [unnamed-chunk-17] (vignette.Rmd) Error: processing vignette 'vignette.Rmd' failed with diagnostics: 'to' must be a finite number --- failed re-building ‘vignette.Rmd’ SUMMARY: processing the following file failed: ‘vignette.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc