* using log directory 'd:/Rcompile/CRANpkg/local/4.3/teal.modules.general.Rcheck' * using R version 4.3.3 (2024-02-29 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'teal.modules.general/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'teal.modules.general' version '0.3.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'teal.modules.general' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s] OK * checking whether the package can be loaded with stated dependencies ... [2s] OK * checking whether the package can be unloaded cleanly ... [3s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [3s] OK * checking startup messages can be suppressed ... [3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [21s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [8s] ERROR Running examples in 'teal.modules.general-Ex.R' failed The error most likely occurred in: > ### Name: tm_a_pca > ### Title: 'teal' module: Principal component analysis > ### Aliases: tm_a_pca > > ### ** Examples > > library(teal.widgets) > > # general data example > data <- teal_data() > data <- within(data, { + require(nestcolor) + USArrests <- USArrests + }) > > datanames(data) <- "USArrests" Warning: `datanames<-()` was deprecated in teal.data 0.7.0. ℹ invalid to use `datanames()<-` or `names()<-` on an object of class `teal_data`. See ?names.teal_data > > app <- init( + data = data, + modules = modules( + tm_a_pca( + "PCA", + dat = data_extract_spec( + dataname = "USArrests", + select = select_spec( + choices = variable_choices( + data = data[["USArrests"]], c("Murder", "Assault", "UrbanPop", "Rape") + ), + selected = c("Murder", "Assault"), + multiple = TRUE + ), + filter = NULL + ), + ggplot2_args = ggplot2_args( + labs = list(subtitle = "Plot generated by PCA Module") + ) + ) + ) + ) [INFO] 2025-01-29 07:42:13.2028 pid:118728 token:[] teal.modules.general Initializing tm_a_pca Error in as.list(data@env) : no slot of name "env" for this object of class "teal_data" Calls: init -> create_app_id -> as.list Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [5s] OK Running 'testthat.R' [4s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [52s] ERROR Error(s) in re-building vignettes: --- re-building 'teal-modules-general.Rmd' using rmarkdown Quitting from lines 43-70 [unnamed-chunk-1] (teal-modules-general.Rmd) Error: processing vignette 'teal-modules-general.Rmd' failed with diagnostics: no slot of name "env" for this object of class "teal_data" --- failed re-building 'teal-modules-general.Rmd' --- re-building 'using-association-plot.Rmd' using rmarkdown Quitting from lines 61-294 [unnamed-chunk-3] (using-association-plot.Rmd) Error: processing vignette 'using-association-plot.Rmd' failed with diagnostics: no slot of name "env" for this object of class "teal_data" --- failed re-building 'using-association-plot.Rmd' --- re-building 'using-bivariate-plot.Rmd' using rmarkdown Quitting from lines 66-618 [unnamed-chunk-3] (using-bivariate-plot.Rmd) Error: processing vignette 'using-bivariate-plot.Rmd' failed with diagnostics: no slot of name "env" for this object of class "teal_data" --- failed re-building 'using-bivariate-plot.Rmd' --- re-building 'using-cross-table.Rmd' using rmarkdown Quitting from lines 60-135 [unnamed-chunk-3] (using-cross-table.Rmd) Error: processing vignette 'using-cross-table.Rmd' failed with diagnostics: no slot of name "env" for this object of class "teal_data" --- failed re-building 'using-cross-table.Rmd' --- re-building 'using-data-table.Rmd' using rmarkdown Quitting from lines 56-106 [unnamed-chunk-3] (using-data-table.Rmd) Error: processing vignette 'using-data-table.Rmd' failed with diagnostics: no slot of name "env" for this object of class "teal_data" --- failed re-building 'using-data-table.Rmd' --- re-building 'using-outliers-module.Rmd' using rmarkdown Quitting from lines 57-188 [unnamed-chunk-3] (using-outliers-module.Rmd) Error: processing vignette 'using-outliers-module.Rmd' failed with diagnostics: no slot of name "env" for this object of class "teal_data" --- failed re-building 'using-outliers-module.Rmd' --- re-building 'using-regression-plots.Rmd' using rmarkdown Quitting from lines 66-266 [unnamed-chunk-3] (using-regression-plots.Rmd) Error: processing vignette 'using-regression-plots.Rmd' failed with diagnostics: no slot of name "env" for this object of class "teal_data" --- failed re-building 'using-regression-plots.Rmd' --- re-building 'using-response-plot.Rmd' using rmarkdown Quitting from lines 65-375 [unnamed-chunk-3] (using-response-plot.Rmd) Error: processing vignette 'using-response-plot.Rmd' failed with diagnostics: no slot of name "env" for this object of class "teal_data" --- failed re-building 'using-response-plot.Rmd' --- re-building 'using-scatterplot-matrix.Rmd' using rmarkdown Quitting from lines 66-153 [unnamed-chunk-3] (using-scatterplot-matrix.Rmd) Error: processing vignette 'using-scatterplot-matrix.Rmd' failed with diagnostics: no slot of name "env" for this object of class "teal_data" --- failed re-building 'using-scatterplot-matrix.Rmd' --- re-building 'using-scatterplot.Rmd' using rmarkdown Quitting from lines 72-373 [unnamed-chunk-4] (using-scatterplot.Rmd) Error: processing vignette 'using-scatterplot.Rmd' failed with diagnostics: no slot of name "env" for this object of class "teal_data" --- failed re-building 'using-scatterplot.Rmd' SUMMARY: processing the following files failed: 'teal-modules-general.Rmd' 'using-association-plot.Rmd' 'using-bivariate-plot.Rmd' 'using-cross-table.Rmd' 'using-data-table.Rmd' 'using-outliers-module.Rmd' 'using-regression-plots.Rmd' 'using-response-plot.Rmd' 'using-scatterplot-matrix.Rmd' 'using-scatterplot.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [20s] OK * checking HTML version of manual ... [9s] OK * DONE Status: 2 ERRORs