* using log directory 'd:/Rcompile/CRANpkg/local/4.3/teal.modules.clinical.Rcheck'
* using R version 4.3.3 (2024-02-29 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'teal.modules.clinical/DESCRIPTION' ... OK
* this is package 'teal.modules.clinical' version '0.9.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'teal.modules.clinical' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [6s] OK
* checking whether the package can be loaded with stated dependencies ... [6s] OK
* checking whether the package can be unloaded cleanly ... [5s] OK
* checking whether the namespace can be loaded with stated dependencies ... [5s] OK
* checking whether the namespace can be unloaded cleanly ... [5s] OK
* checking loading without being on the library search path ... [5s] OK
* checking startup messages can be suppressed ... [6s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [41s] OK
* checking Rd files ... [4s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [12s] ERROR
Running examples in 'teal.modules.clinical-Ex.R' failed
The error most likely occurred in:

> ### Name: tm_a_gee
> ### Title: teal Module: Generalized Estimating Equations (GEE) analysis
> ### Aliases: tm_a_gee
> 
> ### ** Examples
> 
> library(dplyr)

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

> data <- teal_data()
> data <- within(data, {
+   ADSL <- tmc_ex_adsl
+   ADQS <- tmc_ex_adqs %>%
+     filter(ABLFL != "Y" & ABLFL2 != "Y") %>%
+     mutate(
+       AVISIT = as.factor(AVISIT),
+       AVISITN = rank(AVISITN) %>%
+         as.factor() %>%
+         as.numeric() %>%
+         as.factor(),
+       AVALBIN = AVAL < 50 # Just as an example to get a binary endpoint.
+     ) %>%
+     droplevels()
+ })
> datanames <- c("ADSL", "ADQS")
> datanames(data) <- datanames
Warning: `datanames<-()` was deprecated in teal.data 0.7.0.
ℹ invalid to use `datanames()<-` or `names()<-` on an object of class
  `teal_data`. See ?names.teal_data
> join_keys(data) <- default_cdisc_join_keys[datanames]
> 
> app <- init(
+   data = data,
+   modules = modules(
+     tm_a_gee(
+       label = "GEE",
+       dataname = "ADQS",
+       aval_var = choices_selected("AVALBIN", fixed = TRUE),
+       id_var = choices_selected(c("USUBJID", "SUBJID"), "USUBJID"),
+       arm_var = choices_selected(c("ARM", "ARMCD"), "ARM"),
+       visit_var = choices_selected(c("AVISIT", "AVISITN"), "AVISIT"),
+       paramcd = choices_selected(
+         choices = value_choices(data[["ADQS"]], "PARAMCD", "PARAM"),
+         selected = "FKSI-FWB"
+       ),
+       cov_var = choices_selected(c("BASE", "AGE", "SEX", "BASE:AVISIT"), NULL)
+     )
+   )
+ )
Initializing tm_a_gee (prototype)
Error in as.list(data@env) : 
  no slot of name "env" for this object of class "teal_data"
Calls: init -> create_app_id -> as.list
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [15s] OK
  Running 'testthat.R' [14s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [22s] OK
* checking PDF version of manual ... [28s] OK
* checking HTML version of manual ... [31s] OK
* DONE
Status: 1 ERROR