* using log directory 'd:/Rcompile/CRANpkg/local/4.3/dsem.Rcheck' * using R version 4.3.3 (2024-02-29 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'dsem/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dsem' version '1.4.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'dsem' can be installed ... OK * used C++ compiler: 'g++.exe (GCC) 12.3.0' * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [6s] OK * checking whether the package can be loaded with stated dependencies ... [5s] OK * checking whether the package can be unloaded cleanly ... [5s] OK * checking whether the namespace can be loaded with stated dependencies ... [5s] OK * checking whether the namespace can be unloaded cleanly ... [6s] OK * checking loading without being on the library search path ... [6s] OK * checking startup messages can be suppressed ... [6s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [17s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [8s] ERROR Running examples in 'dsem-Ex.R' failed The error most likely occurred in: > ### Name: dsemRTMB > ### Title: Fit dynamic structural equation model > ### Aliases: dsemRTMB > > ### ** Examples > > # Define model > sem = " + # Link, lag, param_name + cprofits -> consumption, 0, a1 + cprofits -> consumption, 1, a2 + pwage -> consumption, 0, a3 + gwage -> consumption, 0, a3 + cprofits -> invest, 0, b1 + cprofits -> invest, 1, b2 + capital -> invest, 0, b3 + gnp -> pwage, 0, c2 + gnp -> pwage, 1, c3 + time -> pwage, 0, c1 + " > > # Load data > data(KleinI, package="AER") > TS = ts(data.frame(KleinI, "time"=time(KleinI) - 1931)) > tsdata = TS[,c("time","gnp","pwage","cprofits",'consumption', + "gwage","invest","capital")] > > # Fit model > fit = dsemRTMB( sem=sem, + tsdata = tsdata, + estimate_delta0 = TRUE, + control = dsem_control(quiet=TRUE) ) Read 10 records Error in advector(e1) : Invalid argument to 'advector' (lost class attribute?) Calls: dsemRTMB ... dgmrf -> as.vector -> Ops.advector -> Arith2 -> advector Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [16s] ERROR Running 'testthat.R' [15s] Running the tests in 'tests/testthat.R' failed. Complete output: > > > library(testthat) > library(dsem) > > # Run tests > testthat::test_check("dsem") Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 lnsigma_j 2 Fixed 4 mu_j 2 Random 5 x_tj 122 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random 4 x_tj 122 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random 4 x_tj 122 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 10 records Coefficient_name Number_of_coefficients Type 1 beta_z 17 Fixed 2 mu_j 8 Random Read 10 records Read 0 records Coefficient_name Number_of_coefficients Type 1 beta_z 2 Fixed 2 mu_j 2 Random Read 2 records Coefficient_name Number_of_coefficients Type 1 beta_z 2 Fixed 2 mu_j 2 Random Read 16 records Coefficient_name Number_of_coefficients Type 1 beta_z 24 Fixed 2 mu_j 8 Fixed 3 x_tj 232 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 5 Fixed 2 mu_j 4 Random Read 4 records Read 16 records [ FAIL 5 | WARN 12 | SKIP 0 | PASS 4 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-gmrf-versions.R:75:3'): dsem constant-variance options ────── apply(margvar, MARGIN = 2, FUN = sd) not equal to c(0, 0). 2/2 mismatches (average diff: NaN) [1] NA - 0 == NA [2] NA - 0 == NA ── Failure ('test-gmrf-versions.R:94:3'): dsem constant-variance options ────── apply(margvar, MARGIN = 2, FUN = sd) not equal to c(0, 0). 2/2 mismatches (average diff: NaN) [1] NA - 0 == NA [2] NA - 0 == NA ── Error ('test-platform.R:34:3'): dsem example is working ──────────────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(sem = sem, tsdata = tsdata, control = dsem_control(getsd = FALSE)) at test-platform.R:34:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) ── Error ('test-platform.R:160:3'): Fixing parameters works ─────────────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(sem = sem, tsdata = tsdata, control = dsem_control(getsd = FALSE)) at test-platform.R:160:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) ── Error ('test-priors.R:43:3'): priors interface is working ────────────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(...) at test-priors.R:43:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) [ FAIL 5 | WARN 12 | SKIP 0 | PASS 4 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [92s] OK * checking PDF version of manual ... [18s] OK * checking HTML version of manual ... [5s] OK * DONE Status: 2 ERRORs