* using log directory 'd:/Rcompile/CRANpkg/local/4.3/bage.Rcheck' * using R version 4.3.3 (2024-02-29 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'bage/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'bage' version '0.9.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'bage' can be installed ... OK * used C++ compiler: 'g++.exe (GCC) 12.3.0' * checking installed package size ... NOTE installed size is 9.8Mb sub-directories of 1Mb or more: doc 4.9Mb libs 3.4Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [34s] OK * checking Rd files ... [2s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [2s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [37s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [137s] ERROR Running 'testthat.R' [136s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(bage) Loading required package: rvec Attaching package: 'rvec' The following objects are masked from 'package:stats': sd, var The following object is masked from 'package:base': rank > > test_check("bage") [ FAIL 11 | WARN 0 | SKIP 7 | PASS 2246 ] ══ Skipped tests (7) ═══════════════════════════════════════════════════════════ • On CRAN (7): 'test-bage_mod-methods.R:2242:5', 'test-bage_mod-methods.R:2257:5', 'test-bage_prior-methods.R:10095:3', 'test-bage_ssvd-methods.R:162:3', 'test-make-inputs.R:1719:3', 'test-make-inputs.R:1728:3', 'test-make-inputs.R:1735:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-bage_prior-methods.R:1701:3'): 'draw_vals_effect' works with bage_prior_svd_rw2random - age and sex ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─bage:::draw_vals_effect(...) at test-bage_prior-methods.R:1701:3 2. └─bage:::draw_vals_effect.bage_prior_svd_rw2random(...) 3. └─bage:::make_matrix_effectfree_effect_inner(...) 4. ├─bage:::make_matrix_sub_orig(...) 5. └─bage:::make_matrix_sub_orig.bage_prior_svd_rw2random(...) 6. └─bage:::make_matrix_sub_orig_svd(...) 7. └─base::crossprod(m_constr, ans) ── Error ('test-bage_prior-methods.R:1739:3'): 'draw_vals_effect' works with bage_prior_svd_rw2zero - age and sex ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─bage:::draw_vals_effect(...) at test-bage_prior-methods.R:1739:3 2. └─bage:::draw_vals_effect.bage_prior_svd_rw2zero(...) 3. └─bage:::make_matrix_effectfree_effect_inner(...) 4. ├─bage:::make_matrix_sub_orig(...) 5. └─bage:::make_matrix_sub_orig.bage_prior_svd_rw2zero(...) 6. └─bage:::make_matrix_sub_orig_svd(...) 7. └─base::crossprod(m_constr, ans) ── Error ('test-bage_prior-methods.R:4835:3'): 'forecast_term' works with bage_prior_svd_ar - con is 'by' ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─bage:::forecast_term(...) at test-bage_prior-methods.R:4835:3 2. └─bage:::forecast_term.bage_prior_svd_ar(...) 3. ├─bage:::make_matrix_effectfree_effect(...) 4. └─bage:::make_matrix_effectfree_effect.bage_prior_svd_ar(...) 5. └─bage:::make_matrix_effectfree_effect_inner(...) 6. ├─bage:::make_matrix_sub_orig(...) 7. └─bage:::make_matrix_sub_orig.bage_prior_svd_ar(...) 8. └─bage:::make_matrix_sub_orig_svd(...) 9. └─base::crossprod(m_constr, ans) ── Error ('test-bage_prior-methods.R:4926:3'): 'forecast_term' works with bage_prior_svd_rwrandom - con is 'by' ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─bage:::forecast_term(...) at test-bage_prior-methods.R:4926:3 2. └─bage:::forecast_term.bage_prior_svd_rwrandom(...) 3. └─bage:::make_matrix_effectfree_effect_inner(...) 4. ├─bage:::make_matrix_sub_orig(...) 5. └─bage:::make_matrix_sub_orig.bage_prior_svd_rwrandom(...) 6. └─bage:::make_matrix_sub_orig_svd(...) 7. └─base::crossprod(m_constr, ans) ── Error ('test-bage_prior-methods.R:4989:3'): 'forecast_term' works with bage_prior_svd_rw2zero - con is 'by' ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─bage:::forecast_term(...) at test-bage_prior-methods.R:4989:3 2. └─bage:::forecast_term.bage_prior_svd_rw2zero(...) 3. └─bage:::make_matrix_effectfree_effect_inner(...) 4. ├─bage:::make_matrix_sub_orig(...) 5. └─bage:::make_matrix_sub_orig.bage_prior_svd_rw2zero(...) 6. └─bage:::make_matrix_sub_orig_svd(...) 7. └─base::crossprod(m_constr, ans) ── Error ('test-bage_prior-methods.R:9869:3'): 'make_matrix_sub_orig' works with bage_prior_svd_ar - sex x time x age interaction, con is 'by' ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─bage:::make_matrix_sub_orig(...) at test-bage_prior-methods.R:9869:3 2. └─bage:::make_matrix_sub_orig.bage_prior_svd_ar(...) 3. └─bage:::make_matrix_sub_orig_svd(...) 4. └─base::crossprod(m_constr, ans) ── Error ('test-mapping-matrices.R:789:3'): 'make_matrix_effectfree_effect' works with SVD-based matrix_sub_orig, con is 'by' ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. └─bage:::make_matrix_effectfree_effect_inner(...) at test-mapping-matrices.R:789:3 2. ├─bage:::make_matrix_sub_orig(...) 3. └─bage:::make_matrix_sub_orig.bage_prior_svd_rwrandom(...) 4. └─bage:::make_matrix_sub_orig_svd(...) 5. └─base::crossprod(m_constr, ans) ── Error ('test-mapping-matrices.R:864:3'): 'make_matrix_perm_along_to_front' works with 2 dimensions, along second ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─testthat::expect_identical(as.matrix(crossprod(m)), diag(6)) at test-mapping-matrices.R:864:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::as.matrix(crossprod(m)) 5. └─base::crossprod(m) ── Error ('test-mapping-matrices.R:872:3'): 'make_matrix_perm_along_to_front' works with 3 dimensions, along second ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─testthat::expect_identical(as.matrix(crossprod(m)), diag(12)) at test-mapping-matrices.R:872:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::as.matrix(crossprod(m)) 5. └─base::crossprod(m) ── Error ('test-mapping-matrices.R:911:3'): 'make_matrix_sub_orig_svd' works with bage_prior_svd_ar - time x age interaction, con is 'none' ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. └─bage:::make_matrix_sub_orig_svd(...) at test-mapping-matrices.R:911:3 2. └─base::crossprod(m_constr, ans) ── Error ('test-mapping-matrices.R:928:3'): 'make_matrix_sub_orig_svd' works with bage_prior_svd_ar - sex x time x age interaction, con is 'none' ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. └─bage:::make_matrix_sub_orig_svd(...) at test-mapping-matrices.R:928:3 2. └─base::crossprod(m_constr, ans) [ FAIL 11 | WARN 0 | SKIP 7 | PASS 2246 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [304s] OK * checking PDF version of manual ... [28s] OK * checking HTML version of manual ... [14s] OK * DONE Status: 1 ERROR, 1 NOTE